View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12012_low_6 (Length: 260)
Name: NF12012_low_6
Description: NF12012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12012_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 88 - 251
Target Start/End: Original strand, 36221354 - 36221514
Alignment:
| Q |
88 |
ttactctcaagtcataaacattacaaaattttactacaacaaaatgaatatactaatcaaaattatcaaatccgtcaccaccctttgaaaagaaaatcaa |
187 |
Q |
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| T |
36221354 |
ttactctcaagtcataaacattacaaaattttactacaacaaaatgaatatactaatcaaaattatcaaatccgtcaccacccttttaaaagaaaatcaa |
36221453 |
T |
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| Q |
188 |
atcaattccatcactaatcatcacactttgaaatcttaaacaatattgagtaacttccctatgc |
251 |
Q |
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| T |
36221454 |
atcaattccatcacta---atcacactttgaaatcttaaacaatattgagtaacttctctatgc |
36221514 |
T |
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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36221293 - 36221352
Alignment:
| Q |
1 |
atattcaatttatatcagaacaaaagaaatacaatatgcattgctgatcaaaattatcag |
60 |
Q |
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| T |
36221293 |
atattcaatttatatgagaacaaaagaaatacaatatgcattgctgatcaaaattatcag |
36221352 |
T |
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