View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12013_high_1 (Length: 242)
Name: NF12013_high_1
Description: NF12013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12013_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 46824445 - 46824223
Alignment:
| Q |
1 |
aataaaaaagttctctagagatgataaccagttttcttttctttcgttttcaagaaattttagatgcagtcatcattaataaatactcaaacatttgaat |
100 |
Q |
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| T |
46824445 |
aataaaaaagttctctagagatgataacctgttttcttttctttcgttttcaagaaattttagatgcagtcatcattaataaatactcaaacatttgaat |
46824346 |
T |
|
| Q |
101 |
tttaaattgaaatctaccaatgtaagcagtattaataatgtataggtagaatgtttccatgtggttaattttcaaacaataaatggaaagaggatatata |
200 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46824345 |
tttaaattgaaatttaccaatgtcagcagtattaataatgtataggtagaatgtctccatgtggttaattttcaaacaataaatggaaagagg----ata |
46824250 |
T |
|
| Q |
201 |
agagcaaacgaagaggacactgaaact |
227 |
Q |
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||||||||| ||||||||||||||||| |
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| T |
46824249 |
agagcaaacaaagaggacactgaaact |
46824223 |
T |
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