View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12014_high_2 (Length: 481)
Name: NF12014_high_2
Description: NF12014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12014_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 46865040 - 46864573
Alignment:
| Q |
1 |
tcataactttaattcaactacgggattgaaacctatatcttcatattcttgtctatattcatgacttgttcattcagagacatcgattgaattaagtatt |
100 |
Q |
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| T |
46865040 |
tcataactttaattcaactatgggattgaaacctatatcttcatattcttgtctatattcatgacttgttcattcagagacatcgattgaattaggtctt |
46864941 |
T |
|
| Q |
101 |
aatttaattttcgtcgttcctaacttttattttg-ggagtcgttcctaacttaaacttatcaataattggtggatatgataacgaatacctcttattaag |
199 |
Q |
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|||||||||| | ||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46864940 |
aatttaatttccttcgtttctaacttttttttttcggagtcgttcctaacttaaacttatcaataattggtggatatgataacgaattcctcttattaag |
46864841 |
T |
|
| Q |
200 |
aggttagcattgtttctaagaaagagttgtatgttggatgaaaaaaatcattcttttgccttcacttga----nnnnnnnnnnnnnnggggatatacaga |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46864840 |
tggttagcattgtttctaagaaagagttgtatgttggatgaaaaaaatcattcttttgccttcacttgattttttttttttttttttggggatatacaga |
46864741 |
T |
|
| Q |
296 |
agataattgagaaaagacaagtcatagacataatgttaaaaatcaaccctatgtccagatgtgctctgtttcatagcnnnnnnngacacacacaatacaa |
395 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
46864740 |
agataattgacaaaagacaagtcatagacatgatgttaaaaatcaaccctatgtccagatgtgctctgtttcataccaaagaaagacacacacaatacaa |
46864641 |
T |
|
| Q |
396 |
ggaccatgcataggaattaataaattgtgttgggtttatactaagcttgtgataggtgagtttggttt |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46864640 |
ggaccatgcataggaattaataaattgtgttgggtttacactaagcttgtgataggtgagtttggttt |
46864573 |
T |
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