View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12014_low_1 (Length: 549)
Name: NF12014_low_1
Description: NF12014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12014_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 18 - 548
Target Start/End: Original strand, 36524894 - 36525425
Alignment:
| Q |
18 |
aaaactcgcattgctacttcatcctgataaaaataaatttgctggtgcagaagctgcgttcaagttgattggggaagccaatagcgtgttgactgaccaa |
117 |
Q |
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|||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36524894 |
aaaactcggattgctacttcatcttgataaaaataaatttactggtgcagaagctgcgttcaagttgattggggaagccaatagcgtgttgactgaccaa |
36524993 |
T |
|
| Q |
118 |
gcaaagtgatctttatacgacatgatagttaaagctcatgtgagtgatgcagtacctaagacttcatcccatcactcaaatgcgaatgtatttgcagaaa |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36524994 |
gcaaagtgatctttataggacatgatagttaaagctcatgtgagtgatgcagtacctaagacttcatcccatcactcaaatgcgaatgtatttgcagaaa |
36525093 |
T |
|
| Q |
218 |
atcaagttccaaatgccacaaaatacccggaaaaatattcttcaaatgtcccttggaatccccatctgaatgctgcacaactgatattctggacaatgtg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36525094 |
atcaagttccaaatgccacaaaatacccggaaaaatattcttcaaatgtcccttggaatccccatctgaatgctgcacaactgatattctggacaatgtg |
36525193 |
T |
|
| Q |
318 |
ccaacactgtaaaggcaggttccagtaccccttaagtattatgaatatggtcataccctgtcacaatttcaagaaaagctttaaagctcaagctattagt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |
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| T |
36525194 |
ccaacactgtaaaggcaggttccagtaccccttaagtattatgaatatggtcataccctgtcacaattgtaagaaaaactttaaagctcaagctattggt |
36525293 |
T |
|
| Q |
418 |
attagtgatcaacagcctgccccttcatctgtaccgtttggtgccccaaaaaaggctcgaatgcaggctccgccaaaaccagcctctaaaagtaatcgtg |
517 |
Q |
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| T |
36525294 |
attagtgatcaacagcctgccccttcatctgtaccctttggtgccccgaaaaaggctcgaatgcaggctccgccaaaactagcctctaaaagtaatcgtg |
36525393 |
T |
|
| Q |
518 |
gaaagagtaagaa-gggctgttttactgtgtc |
548 |
Q |
| |
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||||||||||||| |||||||||||||||||| |
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| T |
36525394 |
gaaagagtaagaaggggctgttttactgtgtc |
36525425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 29 - 318
Target Start/End: Original strand, 36531240 - 36531529
Alignment:
| Q |
29 |
tgctacttcatcctgataaaaataaatttgctggtgcagaagctgcgttcaagttgattggggaagccaatagcgtgttgactgaccaagcaaagtgatc |
128 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| |||||| | | || |
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| T |
36531240 |
tgctacttcatcctgataaaaataaatctgctggtgcagaagctgctttcaagttgattggggaagccaatagggtgttgagtgataaagcaacgcggtc |
36531339 |
T |
|
| Q |
129 |
tttatacgacatgatagttaaagctcatgtgagtgatgcagtacctaagacttcatcccatcactcaaatgcgaatgtatttgcagaaaatcaagttcca |
228 |
Q |
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| T |
36531340 |
tttatacgacataaaggttaaagcccatgttagagctgcagcatctaagacctcatcccatccctctaatgggaa---acctgcagcaaatcaagttcct |
36531436 |
T |
|
| Q |
229 |
aatgccacaaaatacccggaaaaatattcttcaaa-tgtcc--cttggaatccccatctgaatgctgcacaactgatattctggacaatgtgc |
318 |
Q |
| |
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||||| |||||| | | | |||||| ||||||||| | ||| ||| ||||||||||||||| ||||||| | || |||||||||||||||| |
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| T |
36531437 |
aatgcaacaaaacatcagaaaaaatgttcttcaaactctccttctttgaatccccatctgaaacctgcacagccgacattctggacaatgtgc |
36531529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 26306106 - 26305989
Alignment:
| Q |
22 |
ctcgcattgctacttcatcctgataaaaataaatttgctggtgcagaagctgcgttcaagttgattggggaagccaatagcgtgttgactgaccaagcaa |
121 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||| || |||| |||||||||| |
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| T |
26306106 |
ctcgcactgctacttcatcctgataaaaataaattttctggtgctgaagctgctttcaagttgattggagaagccaatagggttttgagtgaccaagcac |
26306007 |
T |
|
| Q |
122 |
agtgatctttatacgaca |
139 |
Q |
| |
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| T |
26306006 |
aacgatctttatatgaca |
26305989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 345
Target Start/End: Complemental strand, 26305963 - 26305825
Alignment:
| Q |
210 |
tgcagaaaatcaagttccaaatgccacaaaatacccggaaaaatattcttcaaatgtcc---cttggaatccccatctgaatgctgcacaactgatattc |
306 |
Q |
| |
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||||| |||||||||||||||| | ||||||||| | ||||| || |||||| ||| |||||||||||||||| || |||||| ||| || |||| |
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| T |
26305963 |
tgcagcaaatcaagttccaaatacaacaaaatactggaaaaaagttttttcaaacttcccttcttggaatccccatctcaaagctgcaaaacagacattc |
26305864 |
T |
|
| Q |
307 |
tggacaatgtgccaacactgtaaaggcaggttccagtac |
345 |
Q |
| |
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|||||| | |||||||| ||||| |||||||||||||| |
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| T |
26305863 |
tggacagtttgccaacattgtaatagcaggttccagtac |
26305825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 520
Target Start/End: Original strand, 36531650 - 36531722
Alignment:
| Q |
448 |
gtaccgtttggtgccccaaaaaaggctcgaatgcaggctccgccaaaaccagcctctaaaagtaatcgtggaa |
520 |
Q |
| |
|
|||| |||||||||||| ||||||| || || ||||| ||| ||||||||||||| |||||||||| |||||| |
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| T |
36531650 |
gtacagtttggtgccccgaaaaaggttccaacgcaggatccaccaaaaccagcctgtaaaagtaatggtggaa |
36531722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 521
Target Start/End: Complemental strand, 26305775 - 26305688
Alignment:
| Q |
434 |
ctgccccttcatctgtaccgtttggtgccccaaaaaaggctcgaatgcaggctccgccaaaaccagcctctaaaagtaatcgtggaaa |
521 |
Q |
| |
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||||||| |||| ||||| |||| |||||| ||||| |||| ||||||||||| |||||| | ||||| ||||||||| ||||||| |
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| T |
26305775 |
ctgccccatcatttgtacggtttcgtgcccggaaaaatgctcccatgcaggctccaccaaaagcggcctccaaaagtaatggtggaaa |
26305688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 47090640 - 47090535
Alignment:
| Q |
29 |
tgctacttcatcctgataaaaataaatttgctggtgcagaagctgcgttcaagttgattggggaagccaatagcgtgttgactgaccaagcaaagtgatc |
128 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||| | ||| || || || || |||| ||||||| ||||| | || |
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| T |
47090640 |
tgctacttcatcctgataaaaataaatctgctggggcagaggctgctttcaagttgatcgtggatgctaacagagtattgagtgaccaaacaaagcgttc |
47090541 |
T |
|
| Q |
129 |
tttata |
134 |
Q |
| |
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|||||| |
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|
| T |
47090540 |
tttata |
47090535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 6791477 - 6791535
Alignment:
| Q |
37 |
catcctgataaaaataaatttgctggtgcagaagctgcgttcaagttgattggggaagc |
95 |
Q |
| |
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|||||||| ||||| || |||||||||||||||||||| || ||| ||||||||||||| |
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|
| T |
6791477 |
catcctgacaaaaacaagtttgctggtgcagaagctgcatttaagctgattggggaagc |
6791535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 49156858 - 49156796
Alignment:
| Q |
33 |
acttcatcctgataaaaataaatttgctggtgcagaagctgcgttcaagttgattggggaagc |
95 |
Q |
| |
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|||||||||||||||||| || ||||| ||||| |||||||| || ||| ||||||| ||||| |
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|
| T |
49156858 |
acttcatcctgataaaaacaagtttgccggtgctgaagctgcatttaagctgattggagaagc |
49156796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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