View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12014_low_4 (Length: 307)
Name: NF12014_low_4
Description: NF12014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12014_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 30853379 - 30853094
Alignment:
| Q |
9 |
aatgagatgaagatatattgtattttcttgactcactcacaaaagacgagtcatggaaactcatgttgtca-cataagattattctaaatttatgggtgg |
107 |
Q |
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| T |
30853379 |
aatgatatgaag-tatattgtattttcttgactcactcacaaaagacgagtcatggaaactcatgttgtcaacataagattattctaaatttatgggcgg |
30853281 |
T |
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| Q |
108 |
tcttttctcaaaattnnnnnnncgtaaagtccaactcaacttctttcatttcatggaagagatttaagtttctactcaagcaacattcatgccataaatt |
207 |
Q |
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| T |
30853280 |
tcttttctcaaaattaaaaaaacgtatagtccaactcaacttctttcatttcatgggagagagttaagtttctactcaagcaacattcatgccacaaatt |
30853181 |
T |
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| Q |
208 |
tcttgagatgaaattaccttaa-tttaaccaatggtttgaagccacaaacttgaatgctcttagacgcatcagcaggaggtactatg |
293 |
Q |
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| T |
30853180 |
tcttgagatgaaattaccttaattttaaccaatggtttgaagtcacaaacttgaatgctcttagacacatcagcaggaggtactatg |
30853094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 15077128 - 15077187
Alignment:
| Q |
25 |
attgtattttcttgactcactcacaaaagacgagtcatggaaactcatgttgtcacataa |
84 |
Q |
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| T |
15077128 |
attgcattttcttgactcactcacaaaagataagttatggaaactcatgttgtcatataa |
15077187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 15077248 - 15077346
Alignment:
| Q |
130 |
cgtaaagtccaactcaacttctttcatttcatggaagagatttaagtttctactcaagcaacattcatgccataaatttcttgagatgaaattaccttaa |
229 |
Q |
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| T |
15077248 |
cgtaaagtcctcctcaacttcttccatttcttgggagagatttgagtttctactc-ggcaatgttcagggcacaaattttctgagatgaaattactttaa |
15077346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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