View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12015_high_13 (Length: 348)
Name: NF12015_high_13
Description: NF12015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12015_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 39734100 - 39734414
Alignment:
| Q |
17 |
agttgaggtaacacgcaatgtggatgagaaagacatcgctgaccatgtaagggtaagtagatattcttacgtactttagagcccaaaataaatcaagcca |
116 |
Q |
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| T |
39734100 |
agttgaggtaacacgcaatgtggatgagaaagacatcgctgaccatgtaagggtaagtagatattcttacgtactttagagcccaaaataaatcaagcca |
39734199 |
T |
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| Q |
117 |
ggtagcgacctatcatcttttgcagcaagtttaacttccaaataagtttagagctctgatttattttatgattgatataagaacgcgtgtcatattcgac |
216 |
Q |
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| T |
39734200 |
ggtagcgacctatcatcttttgcagcaagtttaacttccaaataagtttagagctctgatttattttatgattgatataagaacgcgtgtcatattcgac |
39734299 |
T |
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| Q |
217 |
tattgcaatcaatgactgttcctgaccaaaagtatttcctaaaccaatactttaattatttatttctcatgagatgttccttatgagtatttcaagacaa |
316 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39734300 |
tattgcaatcaatgactgttcccgaccaaaagtatttcctaaaccaatactttaattatttatttctcatgagatgttccttatgagtatttcaagacaa |
39734399 |
T |
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| Q |
317 |
taaaaccaacctatg |
331 |
Q |
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| T |
39734400 |
taaaaccaacctatg |
39734414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 39900393 - 39900303
Alignment:
| Q |
31 |
gcaatgtggatgagaaagacatcgctgaccatgtaagggtaagtagatattcttacgtactttagagcccaaaataaatcaagccaggtag |
121 |
Q |
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| T |
39900393 |
gcaatgtggatgagaaagacactgctgaacatttatgggtaagtagatattcttatgtactttagggcccaaaataaatcaagccaggtag |
39900303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 38966859 - 38966921
Alignment:
| Q |
250 |
atttcctaaaccaatactttaattatttatttctcatgagatgttccttatgagtatttcaag |
312 |
Q |
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| T |
38966859 |
atttcctaaaccaatattttttttatttacttctcatgagaagttccttatgagtatttcaag |
38966921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 39867006 - 39866941
Alignment:
| Q |
17 |
agttgaggtaacacgcaatgtggatgagaaagacatcgctgaccatgtaagggtaagtagatattc |
82 |
Q |
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| T |
39867006 |
agttgaagtaacatgcaatgtggatgagaaagacacggctgagcatataatggtaagtagatattc |
39866941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 39913063 - 39912987
Alignment:
| Q |
38 |
ggatgagaaagacatcgctgaccatgtaagggtaagtagatattcttacgtactttagagcccaaaataaatcaagc |
114 |
Q |
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| T |
39913063 |
ggatgagaaagacactgctgcgcatttaagggtaagtagatattcttatgtaatttagggcctaaattaaaccaagc |
39912987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 37468954 - 37468870
Alignment:
| Q |
31 |
gcaatgtggatgagaaagacatcgctgaccatgtaagggtaagtagatattcttacgtactttagagcccaaaataaatcaagccag |
117 |
Q |
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|||||||||| |||||||| || ||||| ||| ||||||| ||||||| |||| | || ||||||||||||||| | ||||||||| |
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| T |
37468954 |
gcaatgtggacgagaaagatattgctgagcatttaagggttagtagattttctca--tattttagagcccaaaattagtcaagccag |
37468870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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