View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12015_high_4 (Length: 546)

Name: NF12015_high_4
Description: NF12015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12015_high_4
NF12015_high_4
[»] chr7 (5 HSPs)
chr7 (17-534)||(20707275-20707792)
chr7 (17-534)||(20875319-20875836)
chr7 (52-300)||(41594486-41594734)
chr7 (316-486)||(41595380-41595550)
chr7 (375-486)||(31420677-31420788)
[»] chr2 (4 HSPs)
chr2 (52-300)||(43523093-43523341)
chr2 (316-486)||(43523986-43524156)
chr2 (375-486)||(5087406-5087517)
chr2 (86-292)||(5086489-5086695)
[»] chr3 (5 HSPs)
chr3 (52-298)||(22511700-22511946)
chr3 (316-482)||(22510896-22511062)
chr3 (375-486)||(2735308-2735419)
chr3 (375-486)||(40924354-40924465)
chr3 (342-486)||(22127789-22127933)
[»] chr5 (6 HSPs)
chr5 (53-300)||(23123110-23123357)
chr5 (52-300)||(14007347-14007585)
chr5 (316-486)||(23122289-23122459)
chr5 (316-486)||(14008231-14008401)
chr5 (375-486)||(22271618-22271729)
chr5 (224-292)||(7348331-7348399)
[»] chr4 (2 HSPs)
chr4 (316-486)||(50413725-50413895)
chr4 (375-467)||(14798457-14798549)
[»] chr8 (1 HSPs)
chr8 (52-152)||(12869189-12869289)
[»] chr6 (1 HSPs)
chr6 (375-486)||(95980-96091)
[»] scaffold0005 (1 HSPs)
scaffold0005 (375-467)||(41179-41271)
[»] chr1 (1 HSPs)
chr1 (375-454)||(27132127-27132206)


Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 17 - 534
Target Start/End: Original strand, 20707275 - 20707792
Alignment:
Q  17 aataactcctacacatcaacttgttcaagttctaggaattgaagaagtgcataaccaagcttattttgtgaatactttagaacgtgatcctggaaagcgt 116  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20707275 aataactcttacacatcaacttgttcaagttctaggaattgaagaagtgcataaccaagcttattttgtgaatactttaaaacgtgatcctggaaagcgt 20707374  T
Q  117 tcccaaatatggacatatccaccaaatcaagttgataaaatacgaagagcttatttgaattggggttcatattaattatatatagaagaatatcctttgt 216  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| |||||    
T  20707375 tcccaaatatggacatatccactaaatcatgtt-ataaaatacgaagagcttattcgaattggggttcatattaaatatgtatagaagaatatcttttgt 20707473  T
Q  217 ctggtggagagaaacatccaagacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcaccttcaaagggtgctgcannnnnnna 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||       |    
T  20707474 ctggtggagagaaacatccaagacggtttcaagacacttggtttagcatatttctttcatggctagaatatttaccttcaacggatgctgcattttttaa 20707573  T
Q  317 tatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtcaa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| ||||    
T  20707574 tatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtactttcttgacataacattgaagtgtctaaccttcacgatcaa 20707673  T
Q  417 gggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtctctaagcatac-acactcannnnnnngctc 515  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||       ||||    
T  20707674 gggtatgatggtgcaagcaatatgaaagaagaatggaacaatttacaagcgttgtttatgaaggattgtctctaagcatactacactcatttttttgctc 20707773  T
Q  516 atatattacaacttgcctt 534  Q
    |||||||||||||||||||    
T  20707774 atatattacaacttgcctt 20707792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 17 - 534
Target Start/End: Original strand, 20875319 - 20875836
Alignment:
Q  17 aataactcctacacatcaacttgttcaagttctaggaattgaagaagtgcataaccaagcttattttgtgaatactttagaacgtgatcctggaaagcgt 116  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20875319 aataactcttacacatcaacttgttcaagttctaggaattgaagaagtgcataaccaagcttattttgtgaatactttaaaacgtgatcctggaaagcgt 20875418  T
Q  117 tcccaaatatggacatatccaccaaatcaagttgataaaatacgaagagcttatttgaattggggttcatattaattatatatagaagaatatcctttgt 216  Q
    |||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| |||||    
T  20875419 tcccaaatatggacatatccactaaatcatgtt-ataaaatacgaagagcttattcgaattggggttcatattaaatatgtatagaagaatatcttttgt 20875517  T
Q  217 ctggtggagagaaacatccaagacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcaccttcaaagggtgctgcannnnnnna 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||       |    
T  20875518 ctggtggagagaaacatccaagacggtttcaagacacttggtttagcatatttctttcatggctagaatatttaccttcaacggatgctgcattttttaa 20875617  T
Q  317 tatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtcaa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| ||||    
T  20875618 tatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtactttcttgacataacattgaagtgtctaaccttcacgatcaa 20875717  T
Q  417 gggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtctctaagcatac-acactcannnnnnngctc 515  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||       ||||    
T  20875718 gggtatgatggtgcaagcaatatgaaagaagaatggaacaatttacaagcgttgtttatgaaggattgtctctaagcatactacactcatttttttgctc 20875817  T
Q  516 atatattacaacttgcctt 534  Q
    |||||||||||||||||||    
T  20875818 atatattacaacttgcctt 20875836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 52 - 300
Target Start/End: Original strand, 41594486 - 41594734
Alignment:
Q  52 gaattgaagaagtgcataaccaagcttattttgtgaatactttagaacgtgatcctggaaagcgttcccaaatatggacatatccaccaaatcaagttga 151  Q
    ||||||||||| ||||||||   | | ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| || ||    
T  41594486 gaattgaagaattgcataacgcgggtgattttttgaattctttagaacgtgatcctggaaagcgttccccaatatggacatttccagcaaatcatgtgga 41594585  T
Q  152 taaaatacgaagagcttatttgaattggggttcatattaattatatatagaagaatatcctttgtctggtggagagaaacatccaagacggtttcaagac 251  Q
    | ||||||||||||||||| ||||||||||| ||||| || |  || |||||||||||||||||||||||  ||   | ||||||||||||||| |||||    
T  41594586 tgaaatacgaagagcttatctgaattggggtccatatcaaatccatttagaagaatatcctttgtctggtacaggagatcatccaagacggtttaaagac 41594685  T
Q  252 acttggtttagcaaatttctttcatggctagaatattcaccttcaaagg 300  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||    
T  41594686 acttggtttagcttatttcattcatggctagaatattcaccttcaaagg 41594734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 316 - 486
Target Start/End: Original strand, 41595380 - 41595550
Alignment:
Q  316 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 415  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| |||||| |||| | ||||||||||||||| |||| || ||||||||||  |||||    
T  41595380 atatgagatgtgttaccagcactacatctttaagtcttaaggaagcagtgtgtgatatactttctcgacataaccttgatgtttctaaccttcgtggtca 41595479  T
Q  416 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 486  Q
    |||||||||||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||||    
T  41595480 agggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggattgtc 41595550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 375 - 486
Target Start/End: Original strand, 31420677 - 31420788
Alignment:
Q  375 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 474  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  31420677 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 31420776  T
Q  475 tgaaggattgtc 486  Q
    |||| |||||||    
T  31420777 tgaaagattgtc 31420788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 52 - 300
Target Start/End: Original strand, 43523093 - 43523341
Alignment:
Q  52 gaattgaagaagtgcataaccaagcttattttgtgaatactttagaacgtgatcctggaaagcgttcccaaatatggacatatccaccaaatcaagttga 151  Q
    ||||||||||| ||||||||   | | ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| || ||    
T  43523093 gaattgaagaattgcataacgcgggtgattttttgaattctttagaacgtgatcctggaaagcgttccccaatatggacatttccagcaaatcatgtgga 43523192  T
Q  152 taaaatacgaagagcttatttgaattggggttcatattaattatatatagaagaatatcctttgtctggtggagagaaacatccaagacggtttcaagac 251  Q
    | ||||||||||||||||||||||||||||| ||||| || |  || |||||||||||||||||||||||  ||   | ||||||||||||||| ||||     
T  43523193 tgaaatacgaagagcttatttgaattggggtccatatcaaatccatttagaagaatatcctttgtctggtacaggagatcatccaagacggtttaaagat 43523292  T
Q  252 acttggtttagcaaatttctttcatggctagaatattcaccttcaaagg 300  Q
    |||||||||| |  ||||| |||||||||||||||||||||||||||||    
T  43523293 acttggtttaacttatttcattcatggctagaatattcaccttcaaagg 43523341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 316 - 486
Target Start/End: Original strand, 43523986 - 43524156
Alignment:
Q  316 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 415  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| | |||| |||| | ||||||||||||||| |||| || ||||||||||  |||||    
T  43523986 atatgagatgtgttaccagcactacatctttaagtcttaaggaagcggtgtgtgatatactttctcgacataaccttgatgtttctaaccttcgtggtca 43524085  T
Q  416 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 486  Q
    |||||||||||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||||    
T  43524086 agggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggattgtc 43524156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 375 - 486
Target Start/End: Original strand, 5087406 - 5087517
Alignment:
Q  375 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 474  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||||||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  5087406 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgatggtgctagcaatatgagaggagaatggaattgtttacaagcacttttta 5087505  T
Q  475 tgaaggattgtc 486  Q
    |||| |||||||    
T  5087506 tgaaagattgtc 5087517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 86 - 292
Target Start/End: Original strand, 5086489 - 5086695
Alignment:
Q  86 gaatactttagaacgtgatcctggaaagcgttcccaaatatggacatatccaccaaatcaagttgataaaatacgaagagcttatttgaattggggttca 185  Q
    |||| |||||||||||||||||| |||||||   | ||| |||  ||||||||| ||||||   |||  |||||||||||| ||| | || |||||| |     
T  5086489 gaattctttagaacgtgatcctgaaaagcgtattccaatttggcaatatccaccgaatcaaaaggatgcaatacgaagagcgtatctaaaatggggtcct 5086588  T
Q  186 tattaattatatatagaagaatatcctttgtctggtggagagaaacatccaagacggtttcaagacacttggtttagcaaatttctttcatggctagaat 285  Q
    ||| ||    |  ||||| | ||||| ||||||||||   ||||||||||||| |||||||||||||||||||| |||   |||| ||||||||||||||    
T  5086589 tatcaaacgaaattagaaaactatcccttgtctggtgagcagaaacatccaaggcggtttcaagacacttggttcagcttgtttccttcatggctagaat 5086688  T
Q  286 attcacc 292  Q
    |||||||    
T  5086689 attcacc 5086695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 9e-56; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 52 - 298
Target Start/End: Complemental strand, 22511946 - 22511700
Alignment:
Q  52 gaattgaagaagtgcataaccaagcttattttgtgaatactttagaacgtgatcctggaaagcgttcccaaatatggacatatccaccaaatcaagttga 151  Q
    ||||||||||| ||||||||   | | ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| || ||    
T  22511946 gaattgaagaattgcataacgcgggtgattttttgaattctttagaacgtgatcctggaaagcgttccccaatatggacatttccagcaaatcatgtgga 22511847  T
Q  152 taaaatacgaagagcttatttgaattggggttcatattaattatatatagaagaatatcctttgtctggtggagagaaacatccaagacggtttcaagac 251  Q
    | ||||| ||||||||||| | |||||||||  |||| || |  || |||||||||||| ||||||||||  || | | ||||||||||||||| |||||    
T  22511846 tgaaatatgaagagcttatctaaattggggtctatatcaaatccatttagaagaatatcatttgtctggtaaaggggatcatccaagacggtttaaagac 22511747  T
Q  252 acttggtttagcaaatttctttcatggctagaatattcaccttcaaa 298  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||    
T  22511746 acttggtttagcttatttcattcatggctagaatattcaccttcaaa 22511700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 316 - 482
Target Start/End: Complemental strand, 22511062 - 22510896
Alignment:
Q  316 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 415  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| | |||| |||| | ||||||||||||||| |||| || ||||||||||| |||||    
T  22511062 atatgagatgtgttactagcactacatctttaagtcttaaggaagcggtgtgtgatatactttctcgacataaccttgatgtttctaaccttcatggtca 22510963  T
Q  416 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggat 482  Q
    ||||||| |||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||    
T  22510962 agggtataatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggat 22510896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 375 - 486
Target Start/End: Original strand, 2735308 - 2735419
Alignment:
Q  375 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 474  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  2735308 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 2735407  T
Q  475 tgaaggattgtc 486  Q
    |||| |||||||    
T  2735408 tgaaagattgtc 2735419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 375 - 486
Target Start/End: Original strand, 40924354 - 40924465
Alignment:
Q  375 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 474  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  40924354 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 40924453  T
Q  475 tgaaggattgtc 486  Q
    |||| |||||||    
T  40924454 tgaaagattgtc 40924465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 342 - 486
Target Start/End: Complemental strand, 22127933 - 22127789
Alignment:
Q  342 tctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatga 441  Q
    ||||||| ||||| |||| |||| | || | | |||| |||||||||| ||||||| |||||| ||   |||||||||||||| ||||| ||||||||||    
T  22127933 tctttaactcttaaggaagcagtatgtggtatactttttcgacataactttgacgtttctaacatttgtggtcaagggtatgacggtgctagcaatatga 22127834  T
Q  442 aataagaatggaacaatttacaagcattgtttatgaaggattgtc 486  Q
     |  |||||||||   |||||||||| | |||||||| |||||||    
T  22127833 gaggagaatggaatggtttacaagcactatttatgaaagattgtc 22127789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 53 - 300
Target Start/End: Complemental strand, 23123357 - 23123110
Alignment:
Q  53 aattgaagaagtgcataaccaagcttattttgtgaatactttagaacgtgatcctggaaagcgttcccaaatatggacatatccaccaaatcaagttgat 152  Q
    |||||||||| ||||||||   | | ||||| |||||  |||||||||||||| || ||||||||||| ||||||||||| |||| ||||||| || |||    
T  23123357 aattgaagaattgcataacgcgggtgattttttgaattatttagaacgtgatcttgaaaagcgttccccaatatggacatttccagcaaatcatgtggat 23123258  T
Q  153 aaaatacgaagagcttatttgaattggggttcatattaattatatatagaagaatatcctttgtctggtggagagaaacatccaagacggtttcaagaca 252  Q
     ||||||||||||||||| ||||||||||| ||||| || |  || ||||||||||||||| |||||||  || | | ||||||||||||||| ||||||    
T  23123257 gaaatacgaagagcttatctgaattggggtccatatcaaatccatttagaagaatatccttcgtctggtaaaggggatcatccaagacggtttaaagaca 23123158  T
Q  253 cttggtttagcaaatttctttcatggctagaatattcaccttcaaagg 300  Q
    |||||||||||   |||  |||||||||||||||||||||||||||||    
T  23123157 cttggtttagcttgttttattcatggctagaatattcaccttcaaagg 23123110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 52 - 300
Target Start/End: Original strand, 14007347 - 14007585
Alignment:
Q  52 gaattgaagaagtgcataaccaagcttattttgtgaatactttagaacgtgatcctggaaagcgttcccaaatatggacatatccaccaaatcaagttga 151  Q
    ||||||||||| ||||||||   | | ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| || ||    
T  14007347 gaattgaagaattgcataacgcgggtgattttttgaattctttagaacgtgatcctggaaagcgttccccaatatggacatttccagcaaatcatgtgga 14007446  T
Q  152 taaaatacgaagagcttatttgaattggggttcatattaattatatatagaagaatatcctttgtctggtggagagaaacatccaagacggtttcaagac 251  Q
    | ||||||||||||||||| | ||||||||| ||||| ||          ||||||||||||||||||||  ||   | ||||||||||||||| |||||    
T  14007447 tgaaatacgaagagcttatctaaattggggtccatatcaa----------aagaatatcctttgtctggtacaggagatcatccaagacggtttaaagac 14007536  T
Q  252 acttggtttagcaaatttctttcatggctagaatattcaccttcaaagg 300  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||    
T  14007537 acttggtttagcttatttcattcatggctagaatattcaccttcaaagg 14007585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 316 - 486
Target Start/End: Complemental strand, 23122459 - 23122289
Alignment:
Q  316 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 415  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| |||||| |||| | ||||||||||||||| |||| || ||||||||||  |||||    
T  23122459 atatgagatgtgttactagcactacatctttaagtcttaaggaagcagtgtgtgatatactttctcgacataaccttgatgtttctaaccttcgtggtca 23122360  T
Q  416 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 486  Q
    |||||||||||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||||    
T  23122359 agggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggattgtc 23122289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 316 - 486
Target Start/End: Original strand, 14008231 - 14008401
Alignment:
Q  316 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 415  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| | |||| |||| | ||||||||||||||| |||| || ||||||||||  |||||    
T  14008231 atatgagatgtgttaccagcactacatctttaagtcttaaggaagcggtgtgtgatatactttctcgacataaccttgatgtttctaaccttcgtggtca 14008330  T
Q  416 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 486  Q
    | |||||||||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||||    
T  14008331 atggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggattgtc 14008401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 375 - 486
Target Start/End: Complemental strand, 22271729 - 22271618
Alignment:
Q  375 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 474  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  22271729 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 22271630  T
Q  475 tgaaggattgtc 486  Q
    |||| |||||||    
T  22271629 tgaaagattgtc 22271618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 7348331 - 7348399
Alignment:
Q  224 agagaaacatccaagacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcacc 292  Q
    |||||| ||||||||  |||||||| ||||||||||| |||  |||| ||  |||||||||||||||||    
T  7348331 agagaatcatccaaggtggtttcaacacacttggtttggcatgtttcctttgtggctagaatattcacc 7348399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 316 - 486
Target Start/End: Original strand, 50413725 - 50413895
Alignment:
Q  316 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 415  Q
    |||| |||||||||||||||||||||||||||| ||||| |||| |||||| |||| | |||||||||| |||| |||| ||||||||||||| ||||||    
T  50413725 atatgagatatgttacaaacactacatctttaactcttaaggaagcagtgtgtgatatgctttctcgacgtaaccttgatgtgtctaaccttcgcggtca 50413824  T
Q  416 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 486  Q
    ||||| ||||| | ||||||||| || |  |||||||||   || | ||||||||||||| ||||||||||    
T  50413825 agggtgtgatgatacaagcaatacgagaggagaatggaatggttaataagcattgtttattaaggattgtc 50413895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 467
Target Start/End: Complemental strand, 14798549 - 14798457
Alignment:
Q  375 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagca 467  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   ||||||||||    
T  14798549 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagca 14798457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 12869289 - 12869189
Alignment:
Q  52 gaattgaagaagtgcataaccaagcttattttgtgaatactttagaacgtgatcctggaaagcgttcccaaatatggacatatccaccaaatcaagttga 151  Q
    ||||||||||| ||||||||   | | ||||| ||||| |||||||||||||||||||||||||||||| |||| |||||| |||| ||||||| |||||    
T  12869289 gaattgaagaattgcataacgcgggtgattttttgaattctttagaacgtgatcctggaaagcgttccccaatacggacatttccagcaaatcatgttga 12869190  T
Q  152 t 152  Q
    |    
T  12869189 t 12869189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 375 - 486
Target Start/End: Original strand, 95980 - 96091
Alignment:
Q  375 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 474  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  95980 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 96079  T
Q  475 tgaaggattgtc 486  Q
    |||| |||||||    
T  96080 tgaaagattgtc 96091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 467
Target Start/End: Original strand, 41179 - 41271
Alignment:
Q  375 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagca 467  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   ||||||||||    
T  41179 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagca 41271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 454
Target Start/End: Original strand, 27132127 - 27132206
Alignment:
Q  375 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaa 454  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| |||||  ||||||||| |  |||||||||    
T  27132127 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctggcaatatgagaggagaatggaa 27132206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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