View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12015_low_11 (Length: 353)
Name: NF12015_low_11
Description: NF12015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12015_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 28923515 - 28923748
Alignment:
| Q |
1 |
ctctatatttacaatagaaaaagggattatattacacaacagaataaaatttatatgcgacatacatgctttgtgatatcttcatgcagagttctggctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28923515 |
ctctatatttacaatagaaaaagggattatattacacaacagaatgatatttatatgtgacatacatgctttgtgatatcttcatgcagagttctggctt |
28923614 |
T |
|
| Q |
101 |
tcttctcaagctccagctgtgaaacacaacggtggttatcatttggtcacaacaaagtcaatcagttaatatttaataaatacaattctcacacaaggga |
200 |
Q |
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| T |
28923615 |
tcttctcaagctccagctgtgaaacacaacggtggttatcatttggtcacaacaaagtcaatcagttaatatttaataaatacaattctcacacaaggga |
28923714 |
T |
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| Q |
201 |
ataaccataaaatcaatgtcatttaaaattacaa |
234 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
28923715 |
ataaccataaaatcaatgtcatttaaaatgacaa |
28923748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 28914111 - 28914266
Alignment:
| Q |
1 |
ctctatatttacaatagaaaaagggattatattacacaacagaataaaatttatatgcgacatacatgctttgtgatatcttcatgcagagttctggctt |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28914111 |
ctctatctttacaatagaaaaagggattatattacacaacagaataatattgatatgtgacatacatgctttgtgatatcttcatgcagagttctggctt |
28914210 |
T |
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| Q |
101 |
tcttctcaagctccagctgtgaaacacaacggtggttatcatttggtcacaacaaa |
156 |
Q |
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| T |
28914211 |
tctgctcaagctccagctgtgaaacacaaaggtggttatcatttggtcactacaaa |
28914266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 28899752 - 28899932
Alignment:
| Q |
1 |
ctctatatttacaatagaaaa-agggattatattacacaacagaataaaatttatatgcgacatacatgctttgtgatatcttcatgcagagttctggct |
99 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||| | ||| ||| |||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
28899752 |
ctctatctttacaatagaaaaaagggattatattacacaacacagtaatattgatatgcgacatacatgttttgtgatatcttcatgcagacttctggct |
28899851 |
T |
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| Q |
100 |
ttcttctcaagctccagctgtgaaacacaacggtggttatcatttggtcacaacaaagtcaatcagttaatatttaataaat |
181 |
Q |
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| T |
28899852 |
ttctgctcaagctccagctgtaaaagacaa-ggtggttatcatatggtcactacaaattcaataaattattatttaacaaat |
28899932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 28932375 - 28932555
Alignment:
| Q |
1 |
ctctatatttacaatagaaaaa-gggattatattacacaacagaataaaatttatatgcgacatacatgctttgtgatatcttcatgcagagttctggct |
99 |
Q |
| |
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||||||||||| |||||||||| |||| |||||||||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||||||||| ||| |
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| T |
28932375 |
ctctatatttaaaatagaaaaaagggagtatattacacaacagaataatattaatatgcgacacacatgctttgtaatatcttcatgcagagttctagct |
28932474 |
T |
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| Q |
100 |
ttcttctcaagctccagctgtgaaacacaacggtggttatcatttggtcacaacaaagtcaatcagttaatatttaataaat |
181 |
Q |
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| T |
28932475 |
ttctgctcaagctccagctgtgaaacacaaaagtggttatggtttggtca-tacaaattcaatcaattattatttaacaaat |
28932555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 28923790 - 28923863
Alignment:
| Q |
277 |
cgcctagattgtgtggcattaaatctatagtatacttttgtttctcaatgagctgttggtatctctgcttctcc |
350 |
Q |
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| T |
28923790 |
cgcctagattgtgtggcattaaatctatagtatgcttttgtttctcaatgagctgttggtatttttgcttctcc |
28923863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 28889662 - 28889790
Alignment:
| Q |
53 |
atatgcgacatacatgctttgtgatatcttcatgcagagttctggctttcttctcaagctccagctgtgaaacacaacggtggttatcatttggtcacaa |
152 |
Q |
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|||| ||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||| |||||||||| | || ||||| ||||| ||||| |
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| T |
28889662 |
atatacgacatacatgctttatcatatcttcatgcagagttctggctttctgctcaagctccatctgtgaaacaaagacgtagttattatttgatcacag |
28889761 |
T |
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| Q |
153 |
caaagtcaatcagttaatatttaataaat |
181 |
Q |
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|||| |||||| ||| ||||||| |||| |
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| T |
28889762 |
caaatccaatcaattattatttaacaaat |
28889790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 28914564 - 28914614
Alignment:
| Q |
288 |
tgtggcattaaatctatagtatacttttgtttctcaatgagctgttggtat |
338 |
Q |
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|||||||||||||||||||||| ||| ||||||||||| ||||||||||| |
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| T |
28914564 |
tgtggcattaaatctatagtatgcttatgtttctcaatcggctgttggtat |
28914614 |
T |
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