View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12015_low_14 (Length: 348)

Name: NF12015_low_14
Description: NF12015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12015_low_14
NF12015_low_14
[»] chr5 (5 HSPs)
chr5 (62-324)||(27844749-27845011)
chr5 (40-88)||(2629620-2629668)
chr5 (36-102)||(9395342-9395408)
chr5 (42-79)||(14611031-14611068)
chr5 (36-100)||(37149027-37149091)
[»] chr6 (6 HSPs)
chr6 (227-324)||(20139936-20140033)
chr6 (227-324)||(22192836-22192933)
chr6 (222-324)||(31471754-31471856)
chr6 (32-62)||(6069008-6069038)
chr6 (36-94)||(35031073-35031131)
chr6 (36-97)||(6330112-6330173)
[»] chr3 (7 HSPs)
chr3 (30-88)||(30443734-30443792)
chr3 (36-100)||(2787904-2787968)
chr3 (36-94)||(42170418-42170476)
chr3 (36-94)||(51406673-51406731)
chr3 (35-88)||(30443799-30443852)
chr3 (32-77)||(43753754-43753799)
chr3 (36-100)||(4238588-4238652)
[»] chr4 (6 HSPs)
chr4 (33-88)||(42286421-42286476)
chr4 (43-88)||(30315982-30316027)
chr4 (30-79)||(10048569-10048618)
chr4 (32-62)||(6924752-6924782)
chr4 (36-77)||(41615748-41615789)
chr4 (36-101)||(47833604-47833669)
[»] chr2 (5 HSPs)
chr2 (31-79)||(13062177-13062225)
chr2 (36-94)||(16243855-16243913)
chr2 (34-101)||(11714802-11714869)
chr2 (34-88)||(11686207-11686261)
chr2 (35-83)||(14166750-14166798)
[»] chr7 (6 HSPs)
chr7 (38-82)||(24097963-24098007)
chr7 (36-94)||(94390-94448)
chr7 (31-88)||(40349350-40349407)
chr7 (35-79)||(18096940-18096984)
chr7 (36-96)||(23314211-23314271)
chr7 (32-88)||(24710737-24710793)
[»] chr8 (7 HSPs)
chr8 (30-82)||(27567493-27567544)
chr8 (36-94)||(12763726-12763784)
chr8 (32-85)||(24585968-24586021)
chr8 (30-79)||(29642830-29642879)
chr8 (36-100)||(54684-54748)
chr8 (35-79)||(21485006-21485050)
chr8 (35-95)||(39753321-39753381)
[»] chr1 (6 HSPs)
chr1 (36-94)||(14984837-14984895)
chr1 (36-98)||(39402038-39402100)
chr1 (36-94)||(44955278-44955336)
chr1 (30-79)||(3761530-3761579)
chr1 (35-84)||(48050974-48051023)
chr1 (167-211)||(42062116-42062160)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 62 - 324
Target Start/End: Original strand, 27844749 - 27845011
Alignment:
Q  62 atttgtttcttataaaaaagaccggagatagtagtatttttgcagaagaatgtgatgacctttgtggtgttagggaggagagagcgaagagtgttgagat 161  Q
    |||||||||||||||||| ||||| |   ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27844749 atttgtttcttataaaaaggaccgaaatgagtagtatttttgcaaaagaatgtgatgaccttagtggtgttagggaggagagagcgaagagtgttgagat 27844848  T
Q  162 gagcgttgattctttgtctgcgtctcctttcagcttctctatgactcttgcatgcttcttttgattttctctccgattttgatttgtcacagttgatttc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27844849 gagcgttgattctttgtctgcgtctcctttcagcttctctatgactcttgcatgcttcttttgattttctctccgattttgatttgtcacagttgatttc 27844948  T
Q  262 ttctaactctttattatccatccaactctcaaacccgtggaatcttcttaaaggaggaagcat 324  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27844949 ctctaactctttattatccatccaactctcaaacccgtagaatcttcttaaaggaggaagcat 27845011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 2629620 - 2629668
Alignment:
Q  40 atacattaacttttgttgacctatttgtttcttataaaaaagaccggag 88  Q
    |||||||||||||||||||||||  | ||||||||||| ||||||||||    
T  2629620 atacattaacttttgttgacctaaatatttcttataaacaagaccggag 2629668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 9395408 - 9395342
Alignment:
Q  36 ccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagtagtattttt 102  Q
    ||||||||||| |||||||||||||||  | | ||||||||| | |||||||| ||||| |||||||    
T  9395408 ccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtaatattttt 9395342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 14611068 - 14611031
Alignment:
Q  42 acattaacttttgttgacctatttgtttcttataaaaa 79  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  14611068 acattaacttttgttgacccatttctttcttataaaaa 14611031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 37149027 - 37149091
Alignment:
Q  36 ccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagtagtattt 100  Q
    ||||||||||| |||||||||||||||  | | ||||||||| | |||||||| ||||| |||||    
T  37149027 ccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtattattt 37149091  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 20139936 - 20140033
Alignment:
Q  227 tttctctccgattttgatttgtcacagttgatttcttctaactctttattatccatccaactctcaaacccgtggaatcttcttaaaggaggaagcat 324  Q
    |||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20139936 tttctctctgattttgatttgtcacagttgatttcctctaactatttattatccatccaactctcaaacccgtagaatcttcttaaaggaggaagcat 20140033  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 227 - 324
Target Start/End: Complemental strand, 22192933 - 22192836
Alignment:
Q  227 tttctctccgattttgatttgtcacagttgatttcttctaactctttattatccatccaactctcaaacccgtggaatcttcttaaaggaggaagcat 324  Q
    |||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22192933 tttctctctgattttgatttgtcacagttgatttcctctaactatttattatccatccaactctcaaacccgtagaatcttcttaaaggaggaagcat 22192836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 222 - 324
Target Start/End: Complemental strand, 31471856 - 31471754
Alignment:
Q  222 ttgattttctctccgattttgatttgtcacagttgatttcttctaactctttattatccatccaactctcaaacccgtggaatcttcttaaaggaggaag 321  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  || ||||||||| || || ||||||||||||||||||    
T  31471856 ttgattttctctccgattttgatttgtcacagttgatttcctctaactctttattatccatttaattctcaaacctgtagattcttcttaaaggaggaag 31471757  T
Q  322 cat 324  Q
    |||    
T  31471756 cat 31471754  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 62
Target Start/End: Original strand, 6069008 - 6069038
Alignment:
Q  32 tagaccaaatacattaacttttgttgaccta 62  Q
    |||||||||||||||||||||||||||||||    
T  6069008 tagaccaaatacattaacttttgttgaccta 6069038  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 35031073 - 35031131
Alignment:
Q  36 ccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagta 94  Q
    ||||||||||| |||||||||||||||  | ||||||||||| | |||||||| |||||    
T  35031073 ccaaatacattcacttttgttgacctaaatttttcttataaataggaccggaggtagta 35031131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 6330173 - 6330112
Alignment:
Q  36 ccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagtagta 97  Q
    ||||||||||| |||||||||||||||  | | ||||||||| | |||||||| ||||||||    
T  6330173 ccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtagta 6330112  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 30443792 - 30443734
Alignment:
Q  30 tatagaccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggag 88  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  30443792 tatagaccaaatacattaacttttgttgacccatttgtttcttataaaaaagacgggag 30443734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 2787904 - 2787968
Alignment:
Q  36 ccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagtagtattt 100  Q
    ||||||||||| |||||||||||||||  | | ||||||||| | |||||||||||||| |||||    
T  2787904 ccaaatacattcacttttgttgacctaaatttctcttataaataggaccggagatagtattattt 2787968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 42170418 - 42170476
Alignment:
Q  36 ccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagta 94  Q
    ||||||||||| |||||||||||||||  | | ||||||||| |||||||||| |||||    
T  42170418 ccaaatacattcacttttgttgacctaaatttctcttataaataagaccggaggtagta 42170476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 51406731 - 51406673
Alignment:
Q  36 ccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagta 94  Q
    ||||||||||| |||||||||||||||  | | ||||||||| |||||||||| |||||    
T  51406731 ccaaatacattcacttttgttgacctaaatttctcttataaataagaccggaggtagta 51406673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 30443799 - 30443852
Alignment:
Q  35 accaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggag 88  Q
    ||||||||||| |||||| ||||||| |||||| |||| |||||| ||||||||    
T  30443799 accaaatacatcaactttagttgaccaatttgtctcttgtaaaaaggaccggag 30443852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 43753799 - 43753754
Alignment:
Q  32 tagaccaaatacattaacttttgttgacctatttgtttcttataaa 77  Q
    |||| |||||||||||||||||||||||  |||||||| |||||||    
T  43753799 tagatcaaatacattaacttttgttgactcatttgtttattataaa 43753754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 4238652 - 4238588
Alignment:
Q  36 ccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagtagtattt 100  Q
    ||||||||||| |||||||||||||||  | | ||||||||| | |||||||| ||||| |||||    
T  4238652 ccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtattattt 4238588  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 42286421 - 42286476
Alignment:
Q  33 agaccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggag 88  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||    
T  42286421 agaccaaatacatcaacttttgttgaccaatttgtttcttataaaaaggaccggag 42286476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 30315982 - 30316027
Alignment:
Q  43 cattaacttttgttgacctatttgtttcttataaaaaagaccggag 88  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||    
T  30315982 cattaacttttgttgacccatttgtttcttataaaaaggaccggag 30316027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 10048569 - 10048618
Alignment:
Q  30 tatagaccaaatacattaacttttgttgacctatttgtttcttataaaaa 79  Q
    |||||||||||||||| ||||||||||||   ||||||||||||||||||    
T  10048569 tatagaccaaatacatcaacttttgttgattcatttgtttcttataaaaa 10048618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 62
Target Start/End: Original strand, 6924752 - 6924782
Alignment:
Q  32 tagaccaaatacattaacttttgttgaccta 62  Q
    |||||||||||||||||||||||||||||||    
T  6924752 tagaccaaatacattaacttttgttgaccta 6924782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 41615748 - 41615789
Alignment:
Q  36 ccaaatacattaacttttgttgacctatttgtttcttataaa 77  Q
    ||||||||||||||||||||||||||| || | |||||||||    
T  41615748 ccaaatacattaacttttgttgacctaattttctcttataaa 41615789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 47833669 - 47833604
Alignment:
Q  36 ccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagtagtatttt 101  Q
    ||||||||||| |||||||||||||||  | | ||||||||| | |||||||| ||||| ||||||    
T  47833669 ccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtattatttt 47833604  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 13062225 - 13062177
Alignment:
Q  31 atagaccaaatacattaacttttgttgacctatttgtttcttataaaaa 79  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  13062225 atagcccaaatacattaacttttgttgacccatttgtttcttataaaaa 13062177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 16243855 - 16243913
Alignment:
Q  36 ccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagta 94  Q
    ||||||||||| |||||||||||||||  | ||||||||||| | ||||||||||||||    
T  16243855 ccaaatacattcacttttgttgacctaaatttttcttataaataggaccggagatagta 16243913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 11714869 - 11714802
Alignment:
Q  34 gaccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagtagtatttt 101  Q
    ||||||| ||||||| |||||||||||  ||||||| |||||||||| |||||||  |||| ||||||    
T  11714869 gaccaaaaacattaaattttgttgaccactttgttttttataaaaaataccggagggagtattatttt 11714802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 11686207 - 11686261
Alignment:
Q  34 gaccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggag 88  Q
    ||||||| ||||||| |||||||||||  ||||||| |||||||||| |||||||    
T  11686207 gaccaaaaacattaaattttgttgaccactttgttttttataaaaaataccggag 11686261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 14166750 - 14166798
Alignment:
Q  35 accaaatacattaacttttgttgacctatttgtttcttataaaaaagac 83  Q
    ||||||||||| |||||||||||||  |||||| |||||| ||||||||    
T  14166750 accaaatacataaacttttgttgactcatttgtctcttattaaaaagac 14166798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 24098007 - 24097963
Alignment:
Q  38 aaatacattaacttttgttgacctatttgtttcttataaaaaaga 82  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||    
T  24098007 aaatacattaaattttgttgacctaattgtttcttataaaaaaga 24097963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 94390 - 94448
Alignment:
Q  36 ccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagta 94  Q
    ||||||||||| |||||||||||||||  | | ||||||||| | ||||||||||||||    
T  94390 ccaaatacattcacttttgttgacctaaatttctcttataaataggaccggagatagta 94448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 40349407 - 40349350
Alignment:
Q  31 atagaccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggag 88  Q
    ||||| |||||||||||||| |||||||   |||||||| ||||||||||||| ||||    
T  40349407 atagatcaaatacattaactcttgttgatgcatttgttttttataaaaaagacaggag 40349350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 18096984 - 18096940
Alignment:
Q  35 accaaatacattaacttttgttgacctatttgtttcttataaaaa 79  Q
    |||||||| || |||||||||||||| |||||| |||||||||||    
T  18096984 accaaataaatcaacttttgttgacccatttgtctcttataaaaa 18096940  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 23314211 - 23314271
Alignment:
Q  36 ccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagtagt 96  Q
    ||||||||||| |||||||||||||||  | | ||||||||| | |||||||| |||||||    
T  23314211 ccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtagt 23314271  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 24710737 - 24710793
Alignment:
Q  32 tagaccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggag 88  Q
    |||| ||||||||| |||||||||||||| | |||| | ||||||||| ||||||||    
T  24710737 tagatcaaatacatcaacttttgttgacccagttgtcttttataaaaaggaccggag 24710793  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 27567544 - 27567493
Alignment:
Q  30 tatagaccaaatacattaacttttgttgacctatttgtttcttataaaaaaga 82  Q
    |||||||||||||||| |||||| ||||||| ||||||||||||| |||||||    
T  27567544 tatagaccaaatacatcaacttt-gttgacccatttgtttcttatgaaaaaga 27567493  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 12763726 - 12763784
Alignment:
Q  36 ccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagta 94  Q
    ||||||||||| |||||||||||||||  | | ||||||||| |||||||||| |||||    
T  12763726 ccaaatacattcacttttgttgacctaaatttctcttataaataagaccggaggtagta 12763784  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 24586021 - 24585968
Alignment:
Q  32 tagaccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccg 85  Q
    ||||||||||| || |||||||||||||  |||| ||||||||||||| |||||    
T  24586021 tagaccaaataaatcaacttttgttgactcatttatttcttataaaaaggaccg 24585968  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 29642879 - 29642830
Alignment:
Q  30 tatagaccaaatacattaacttttgttgacctatttgtttcttataaaaa 79  Q
    ||||||| ||||| ||||| ||||||||||| |||||| |||||||||||    
T  29642879 tatagactaaatatattaatttttgttgaccaatttgtctcttataaaaa 29642830  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 54684 - 54748
Alignment:
Q  36 ccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagtagtattt 100  Q
    ||||||||||| |||||||||||||||  | | ||||||||| | |||||||| ||||| |||||    
T  54684 ccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtattattt 54748  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 21485006 - 21485050
Alignment:
Q  35 accaaatacattaacttttgttgacctatttgtttcttataaaaa 79  Q
    ||||||||||| || ||| ||||||| ||||||||||||||||||    
T  21485006 accaaatacatcaattttggttgaccaatttgtttcttataaaaa 21485050  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 39753321 - 39753381
Alignment:
Q  35 accaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagtag 95  Q
    ||||||||||| |||||| | |||| ||||||| ||||||||||  ||||||||| |||||    
T  39753321 accaaatacatcaactttagatgacttatttgtctcttataaaatggaccggagagagtag 39753381  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 14984895 - 14984837
Alignment:
Q  36 ccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagta 94  Q
    ||||||||||| |||||||||||||||  | | ||||||||| | ||||||||||||||    
T  14984895 ccaaatacattcacttttgttgacctaaatttctcttataaataggaccggagatagta 14984837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 39402038 - 39402100
Alignment:
Q  36 ccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagtagtat 98  Q
    ||||||||||| |||||||||||||||  | | ||||||||| | |||||||| |||||||||    
T  39402038 ccaaatacattcacttttgttgacctaaatttctcttataaataggaccggaggtagtagtat 39402100  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 44955278 - 44955336
Alignment:
Q  36 ccaaatacattaacttttgttgacctatttgtttcttataaaaaagaccggagatagta 94  Q
    ||||||||||| |||||||||||||||  | ||||||||||| | |||||||| |||||    
T  44955278 ccaaatacattcacttttgttgacctaaatttttcttataaataggaccggaggtagta 44955336  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 3761530 - 3761579
Alignment:
Q  30 tatagaccaaatacattaacttttgttgacctatttgtttcttataaaaa 79  Q
    |||| ||||||||||| |||||||||||||  |||| |||||||||||||    
T  3761530 tatataccaaatacatcaacttttgttgacaaatttatttcttataaaaa 3761579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 48050974 - 48051023
Alignment:
Q  35 accaaatacattaacttttgttgacctatttgtttcttataaaaaagacc 84  Q
    ||||||||||| |||||| ||||||| |||||| ||||||||||| ||||    
T  48050974 accaaatacatcaactttagttgaccaatttgtctcttataaaaaggacc 48051023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 42062116 - 42062160
Alignment:
Q  167 ttgattctttgtctgcgtctcctttcagcttctctatgactcttg 211  Q
    |||||||| | ||||||||| ||||||||||| ||||||||||||    
T  42062116 ttgattctctctctgcgtcttctttcagcttcactatgactcttg 42062160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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