View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12015_low_15 (Length: 328)
Name: NF12015_low_15
Description: NF12015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12015_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 35070398 - 35070669
Alignment:
| Q |
18 |
atatatcttgtgttctcatatttgacaaatataataagaagaaattttaggcacccattatatttggttgggtgttggtactttgtagataaaattattt |
117 |
Q |
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| T |
35070398 |
atatatcttgtgttctcctatttgacaaatataataagaagaaattttaggcacccattatatttggttgggtgtt------ttgtagataaaattattt |
35070491 |
T |
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| Q |
118 |
aaatttatattcattttaaaataactacatnnnnnnnntgcaatgacattaaattattagatgatgagtatgtatctaataaaactccaaaatatattgg |
217 |
Q |
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| T |
35070492 |
aaatttatattcattttaaaataactacataaaaaaa-tgccatgacattaaattattagatgatgagtatgtatctaataaaactccaaaatatattgg |
35070590 |
T |
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| Q |
218 |
agtgttcgacttagaatattgggtttttgtttgtggggatatctatcggaaacaaggcaactagtattatttttatgca |
296 |
Q |
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| T |
35070591 |
agtgttcgacttagaatattgggtttttgtttgtggggatatctatcggatacaaggcaacttgtattatttttatgca |
35070669 |
T |
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