View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12015_low_16 (Length: 237)
Name: NF12015_low_16
Description: NF12015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12015_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 4134664 - 4134868
Alignment:
| Q |
18 |
gtttgttgaccaaatgatgctgccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttga |
117 |
Q |
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| T |
4134664 |
gtttgttgaccaaatgatgataccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttga |
4134763 |
T |
|
| Q |
118 |
tctctgtttgcaatccatatgttgttggtttcattgatgtaccaaattcctaagtaacggttggttgaatttaatgggctgaaaaatcctagcttgaggt |
217 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
4134764 |
tctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgttcgaatttaatgggctgaaaaatcctagcttgaggt |
4134863 |
T |
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| Q |
218 |
ctgtg |
222 |
Q |
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||||| |
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| T |
4134864 |
ctgtg |
4134868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 4145466 - 4145670
Alignment:
| Q |
18 |
gtttgttgaccaaatgatgctgccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145466 |
gtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttga |
4145565 |
T |
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| Q |
118 |
tctctgtttgcaatccatatgttgttggtttcattgatgtaccaaattcctaagtaacggttggttgaatttaatgggctgaaaaatcctagcttgaggt |
217 |
Q |
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| T |
4145566 |
tctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttgaggt |
4145665 |
T |
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| Q |
218 |
ctgtg |
222 |
Q |
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||||| |
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| T |
4145666 |
ctgtg |
4145670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 4163830 - 4164024
Alignment:
| Q |
20 |
ttgttgaccaaatgatgctgccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttgatc |
119 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
4163830 |
ttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtgaattgtgactattccatttgaatccttgagtggttgatc |
4163929 |
T |
|
| Q |
120 |
tctgtttgcaatccatatgttgttggtttcattgatgtaccaaattcctaagtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
214 |
Q |
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| T |
4163930 |
tctgtttgcaatccatatattgttggtctcattgatgtaccaaattcctaggtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
4164024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 40 - 214
Target Start/End: Original strand, 4124141 - 4124315
Alignment:
| Q |
40 |
ccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgt |
139 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4124141 |
ccatttggtttgttcaatattacaagatttccatttttgtgaattgtgactattccatttgaatctttgagtggttgatctctgtttgcaatccatatat |
4124240 |
T |
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| Q |
140 |
tgttggtttcattgatgtaccaaattcctaagtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
214 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4124241 |
tgttggtctcattgatgtaccaaattcctaggtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
4124315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 40 - 214
Target Start/End: Original strand, 4153491 - 4153665
Alignment:
| Q |
40 |
ccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgt |
139 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4153491 |
ccatttggtttgttcaatattataaaatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatat |
4153590 |
T |
|
| Q |
140 |
tgttggtttcattgatgtaccaaattcctaagtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
214 |
Q |
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||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4153591 |
tgttggtcttattgatgtaccaaattcctaggtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
4153665 |
T |
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