View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12015_low_5 (Length: 484)
Name: NF12015_low_5
Description: NF12015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12015_low_5 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 22684549 - 22684888
Alignment:
| Q |
1 |
atcagaagtgtaagtgcaatagagcaacgcacaaaggtagtaataatagtatggacaatacttaccaaaatatggaaaagagagggccacaaataaactt |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684549 |
atcagaagtgtaagtgcaacagagcaacgcacaaaggtagtaataatagtatggacaatacttaccaaaatatggaaaagagagggccacaaataaactt |
22684648 |
T |
|
| Q |
101 |
gaaaacactaaagttgttctgataaaaagagacatagcataacatcttagcctaggagaagggacgacaagttcctctatgcttgatgcaacaggcaata |
200 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684649 |
gaaaacactaaagttgttttaataaaaagagacatagcataacatcttagcctaggagaagggacgacaagttcctctatgcttgatgcaacaggcaata |
22684748 |
T |
|
| Q |
201 |
atattaaggcaatttttgccaaaggagtcacaacctataaataaaacaaaacacataaatttgttaaaatgtgtcatctatgtgataaaacatgaattta |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684749 |
atattaaggcaaattttgccaaaggagtcacaacctataaataaaacaaaacacagaaatttgttaaaatgtgtcatctatgtgataaaacatgaattta |
22684848 |
T |
|
| Q |
301 |
aagtcaagaaaaaaggaacaaggagattaattttgttttc |
340 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
22684849 |
aagtcaagaaaaaaggaacaaggagattaattttgatttc |
22684888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 23 - 303
Target Start/End: Original strand, 22695870 - 22696146
Alignment:
| Q |
23 |
agcaacgcacaaaggtagtaataatagtatggacaatacttaccaaaatatggaaaagagagggccacaaataaacttgaaaacactaaagttgttctga |
122 |
Q |
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| T |
22695870 |
agcaatgcacaaaggtagtaataatggtatg-acaaaacttaccaaaatatggaaaagagagggccacaactaaacttgaaaccactaaagctgttctga |
22695968 |
T |
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| Q |
123 |
taaaaagagacatagcataacatcttagcctaggagaagggacgacaagttcctctatgcttgatgcaacaggcaataatattaaggcaatttttgccaa |
222 |
Q |
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| | || |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| |||||||| |
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| T |
22695969 |
tgagaatagacataggataacatcttagcctaggagaagggac---aagttcctctatgcttgatgcaataggcaataatgttaaggcatattttgccag |
22696065 |
T |
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| Q |
223 |
aggagtcacaacctataaataaaacaaaacacataaatttgttaaaatgtgtcatctatgtgataaaacatgaatttaaag |
303 |
Q |
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| T |
22696066 |
aggagtcacaacctatatgtaaaataaaacacagaaatttgttaaaatttgtcatctatgtgataaaacatgaatttaaag |
22696146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 334 - 465
Target Start/End: Original strand, 24493177 - 24493308
Alignment:
| Q |
334 |
tgttttccttggttattctacacaatatcactcttacatttgtctagaccgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
433 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493177 |
tgttttccttggttattctacacaatatcactcttatatttgtctagaccgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
24493276 |
T |
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| Q |
434 |
cagtttcctttctcccatcaaaacccccaaac |
465 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
24493277 |
cagtttcctttctcccatcaaaacccccaaac |
24493308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 334 - 465
Target Start/End: Original strand, 92542 - 92673
Alignment:
| Q |
334 |
tgttttccttggttattctacacaatatcactcttacatttgtctagaccgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
433 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92542 |
tgttttacttggttattctacacaatatcactcttacatttgtctagatcgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
92641 |
T |
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| Q |
434 |
cagtttcctttctcccatcaaaacccccaaac |
465 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
92642 |
cagtttcctttctcccatcaaaacccccaaac |
92673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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