View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12015_low_6 (Length: 437)
Name: NF12015_low_6
Description: NF12015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12015_low_6 |
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| [»] scaffold0027 (2 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 76 - 423
Target Start/End: Original strand, 60443 - 60799
Alignment:
| Q |
76 |
gttgcatggtaaaaatatcattttcaattctatgttttagatatgtgaacactatgttagggagataannnnnnngtccttatattattgttgtt--gtg |
173 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
60443 |
gttgcatgataaaaatatcattttcaattctatgttttagatatgtgaacactatgttagggagataatttttttgtccttatattattgttgttatgtg |
60542 |
T |
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| Q |
174 |
tcaatactgtagccaagttataatgccaaatggtcccctagcttaac-------gacgatattgttagactaaacaccttcattcagatttaaagatccg |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60543 |
tcaatactgtagccaagttataatgccaaatggtcccctagcttaaccagtaacgacgatattgttagactaaacaccttcattcagatttaaagatccg |
60642 |
T |
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| Q |
267 |
tgagttttaagtggtgtttgtcacttcttctaaggacctaaaataacatgccaaataatcgacaagctaacatacaataattagccagaaagtaattgaa |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60643 |
tgagttttaagtggtgtttgtcacttcttctaaggacctaaaataacatgccaaataatcgacaagctaacatacaataattagccagaaagtaattgaa |
60742 |
T |
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| Q |
367 |
aaatggaaaagaaatcaccctcttaatcctcaactagtttttaaaaagtgtgttcat |
423 |
Q |
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| T |
60743 |
aaatggaaaagaaatcaccctcttaatcctcaactagtttttaaaatgtgtgttcat |
60799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 76 - 423
Target Start/End: Original strand, 67470 - 67826
Alignment:
| Q |
76 |
gttgcatggtaaaaatatcattttcaattctatgttttagatatgtgaacactatgttagggagataannnnnnngtccttatattattgttgtt--gtg |
173 |
Q |
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| T |
67470 |
gttgcatgataaaaatatcattttcaattctatgttttagatatgtgaacactatgttagggagataatttttttgtccttatattattgttgttatgtg |
67569 |
T |
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| Q |
174 |
tcaatactgtagccaagttataatgccaaatggtcccctagcttaac-------gacgatattgttagactaaacaccttcattcagatttaaagatccg |
266 |
Q |
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| T |
67570 |
tcaatactgtagccaagttataatgccaaatggtcccctagcttaactagtaacgacgatattgttagactaaacaccttcattcagatttaaagatccg |
67669 |
T |
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| Q |
267 |
tgagttttaagtggtgtttgtcacttcttctaaggacctaaaataacatgccaaataatcgacaagctaacatacaataattagccagaaagtaattgaa |
366 |
Q |
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| T |
67670 |
tgagttttaagtggtgtttgtcacttcttctaaggacctaaaataacatgccaaataatcgacaagctaacatacaataattagccagaaagtaattgaa |
67769 |
T |
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| Q |
367 |
aaatggaaaagaaatcaccctcttaatcctcaactagtttttaaaaagtgtgttcat |
423 |
Q |
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| T |
67770 |
aaatggaaaagaaatcaccctcttaatcctcaactagtttttaaaatgtgtgttcat |
67826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 76 - 423
Target Start/End: Complemental strand, 21323364 - 21323008
Alignment:
| Q |
76 |
gttgcatggtaaaaatatcattttcaattctatgttttagatatgtgaacactatgttagggagataannnnnnngtccttatattattgttgtt--gtg |
173 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
21323364 |
gttgcatgataaaaatatcattttcaattctatgttttagatatgtgaacactatgttagggagataatttttttgtccttatattattgttgttatgtg |
21323265 |
T |
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| Q |
174 |
tcaatactgtagccaagttataatgccaaatggtcccctagcttaac-------gacgatattgttagactaaacaccttcattcagatttaaagatccg |
266 |
Q |
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| T |
21323264 |
tcaatactgtagccaagttataatgccaaatggtcccctagcttaaccagtaacgacgatattgttagactaaacaccttcattcagatttaaagatccg |
21323165 |
T |
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| Q |
267 |
tgagttttaagtggtgtttgtcacttcttctaaggacctaaaataacatgccaaataatcgacaagctaacatacaataattagccagaaagtaattgaa |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21323164 |
tgagttttaagtggtgtttgtcacttcttctaaggacctaaaataacatgccaaataatcgacaagctaacatacaataattagccagaaagtaattgaa |
21323065 |
T |
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| Q |
367 |
aaatggaaaagaaatcaccctcttaatcctcaactagtttttaaaaagtgtgttcat |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21323064 |
aaatggaaaagaaatcaccctcttaatcctcaactagtttttaaaatgtgtgttcat |
21323008 |
T |
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