View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12015_low_9 (Length: 386)
Name: NF12015_low_9
Description: NF12015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12015_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 30274306 - 30274128
Alignment:
| Q |
1 |
cgaatagtttgctatgaatttacggtgcttatggaagagtcagaatctaagagtttggcagaacatttcagagacgtgccaggccattacagttcgagca |
100 |
Q |
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| T |
30274306 |
cgaatagtttgctatgaatttacggtggttatggaagagtcagaatctaagagtttggcagaacatttcagagatgtgccaggccattacagttcgagca |
30274207 |
T |
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| Q |
101 |
aggcagctgttacatgactggagagaagcaaatatcagaaaattgtattctgatgcagctggaaacatagcagaaccga |
179 |
Q |
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| T |
30274206 |
aggcagctgttacatgactggagagaagcaaatatcagaaaattgtattctgatgcagctggaaacatggcagaaccga |
30274128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 211 - 370
Target Start/End: Complemental strand, 30274126 - 30273967
Alignment:
| Q |
211 |
gcaaagtttgatgccatcacaagttaagtgggtaaaaccgcagcaagggaggttaaaatgtaatatagatggggtgttttcggaagctttaaaccgtgtt |
310 |
Q |
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| T |
30274126 |
gcaaagtttgatgccatcacaagttaagtgggcaaaaccgcagcaagggaggttaaaatgtaatatagatggggcgttttcggaagctttaaaccgtgtt |
30274027 |
T |
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| Q |
311 |
gatgttgagctatgcaaacgggatgctgctggaaattttaaaaggcaaagatgttgtgga |
370 |
Q |
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| T |
30274026 |
ggtgttgagctatgcaaacgggatgctgctggaaattttaaaaggcaaagatgttgtgga |
30273967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 27040425 - 27040291
Alignment:
| Q |
1 |
cgaatagtttgctatgaatttacggtgcttatggaagagtcagaatctaagagtttggcagaacatttcagagacgtgccaggccattacagttcgagca |
100 |
Q |
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| T |
27040425 |
cgaacagtttgcgatgaatttatggagtttatggaagagtcggaatcttcgaatatggcagaatatttcagaaacatgccaggctatttctgctcgagca |
27040326 |
T |
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| Q |
101 |
aggcagctgttacatgactggagagaagcaaatat |
135 |
Q |
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| T |
27040325 |
caacagatgttagttgagtggagagaagcaaatat |
27040291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 38356387 - 38356460
Alignment:
| Q |
272 |
aatatagatggggtgttttcggaagctttaaaccgtgttgatgttgagctatgcaaacgggatgctgctggaaa |
345 |
Q |
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|||||||||| || ||||||||||| |||||| ||||||| ||||| | |||||| ||| ||||||||||||| |
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| T |
38356387 |
aatatagatgcggcgttttcggaagttttaaatcgtgttggtgttgggttatgcatccggaatgctgctggaaa |
38356460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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