View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12016_low_1 (Length: 407)
Name: NF12016_low_1
Description: NF12016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12016_low_1 |
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| [»] scaffold0223 (1 HSPs) |
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Alignment Details
Target: scaffold0223 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 25282 - 24959
Alignment:
| Q |
1 |
ctttaataaatctaaaaattagaagtaaattttacaattattaatatttggtgatgnnnnnnnnnnttacaaagacccagaattccaactaatgctatct |
100 |
Q |
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| T |
25282 |
ctttaataaatctaaaaattagaagtaaattttacaattattaatatttggtgatgaaaagaaaaattacaaagacctagaattccaactaatgctatct |
25183 |
T |
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| Q |
101 |
acgatcttctcaatagtagataatagtttgtgagatctaacatcaaaacgttggattcttgtgcggtgtagaaaatatctaactagttagcaacaccgtc |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25182 |
acgatcttctcaattgtagataatagtttgtgagatctaacatcaaaacattggattcttgtgcggtgtagaaaatatctaactagttagcaacaatgtc |
25083 |
T |
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| Q |
201 |
taaaatcatcatagaacgaaagaaaatgcacgtaatcgaaagaaaattttgcctcacttttcgtagagatgattttgttgtaattattgtaacttccttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
25082 |
taaaatcatcatagaacgaaagaaaatgcacgtaatcgaaagaaaattttgcctcgcttttcttagagatgattttgttgtaattattgtaactaccttc |
24983 |
T |
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| Q |
301 |
caatctgaaccgtcgtagcactaa |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
24982 |
caatctgaaccgtcgtagcactaa |
24959 |
T |
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