View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12016_low_2 (Length: 213)

Name: NF12016_low_2
Description: NF12016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12016_low_2
NF12016_low_2
[»] chr2 (4 HSPs)
chr2 (11-199)||(42236415-42236603)
chr2 (22-195)||(21659005-21659178)
chr2 (62-118)||(20262766-20262823)
chr2 (157-194)||(32183985-32184022)
[»] scaffold0002 (1 HSPs)
scaffold0002 (22-195)||(346749-346922)
[»] chr7 (3 HSPs)
chr7 (22-194)||(32864409-32864581)
chr7 (23-124)||(32868686-32868788)
chr7 (154-194)||(8904758-8904798)
[»] chr5 (6 HSPs)
chr5 (22-195)||(35247630-35247795)
chr5 (25-124)||(17773636-17773736)
chr5 (23-124)||(15195921-15196023)
chr5 (154-199)||(1954382-1954427)
chr5 (154-195)||(12658614-12658655)
chr5 (154-195)||(25640413-25640454)
[»] chr1 (3 HSPs)
chr1 (24-178)||(25078476-25078631)
chr1 (26-81)||(27900399-27900454)
chr1 (56-139)||(32839197-32839281)
[»] chr8 (3 HSPs)
chr8 (24-88)||(21123123-21123187)
chr8 (92-129)||(15683684-15683721)
chr8 (154-195)||(11151966-11152007)
[»] chr6 (1 HSPs)
chr6 (12-84)||(20489886-20489958)
[»] chr4 (1 HSPs)
chr4 (62-117)||(8069593-8069649)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 42236603 - 42236415
Alignment:
Q  11 atggacatcatttggattggttcggcccgaaagggcatgtatgacttgatgtttagggagttgttggaacttgaatcggactgtgttgacagacgattca 110  Q
    ||||||| | ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42236603 atggacaacgtttggattggttcagtccgaaagggcatgtatgacttgatgtttagggagttgttggaacttgaatcggactgtgttgacagacgattca 42236504  T
Q  111 tacgcctatttagaagcttgaaacactagaactatgnnnnnnngcaattcggtttcgcgtccatacgtgggtgcgctggattgtctgtg 199  Q
    ||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||| ||||||||||||||||||||||    
T  42236503 tacgcctatttagaagcttgaaacactagaactatgtttttttgcaattcgatttcgcgtccatacatgggtgcgctggattgtctgtg 42236415  T

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Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 21659005 - 21659178
Alignment:
Q  22 ttggattggttcggcccgaaagggcatgtatgacttgatgtttagggagttgttggaacttgaatcggactgtgttgacagacgattcatacgcctattt 121  Q
    ||||||||||||||||| ||||||| |||||||||||||||||| ||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||    
T  21659005 ttggattggttcggcccaaaagggcgtgtatgacttgatgtttaaggagttgctggaacttgaatcgcactatgttgacagacgattcatacgcctattt 21659104  T
Q  122 agaagcttgaaacactagaactatgnnnnnnngcaattcggtttcgcgtccatacgtgggtgcgctggattgtc 195  Q
    |||||||||||||||||||||||||       |||||||| |||||| ||||||||||||||||||||||||||    
T  21659105 agaagcttgaaacactagaactatgtttttttgcaattcgatttcgcatccatacgtgggtgcgctggattgtc 21659178  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 20262823 - 20262766
Alignment:
Q  62 tttagggagttgttggaacttgaatcgga-ctgtgttgacagacgattcatacgccta 118  Q
    ||||||||| ||||||| |||||||||   |||||||| |||||||||||||||||||    
T  20262823 tttagggagctgttggaccttgaatcgtttctgtgttggcagacgattcatacgccta 20262766  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 32184022 - 32183985
Alignment:
Q  157 attcggtttcgcgtccatacgtgggtgcgctggattgt 194  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  32184022 attcggtttcgcatccatacgtgggtgcgctgaattgt 32183985  T

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Target: scaffold0002 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 346922 - 346749
Alignment:
Q  22 ttggattggttcggcccgaaagggcatgtatgacttgatgtttagggagttgttggaacttgaatcggactgtgttgacagacgattcatacgcctattt 121  Q
    ||||||||||||||||||||||||| ||||||||||| | |||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  346922 ttggattggttcggcccgaaagggcgtgtatgacttgctatttacggagttgctggaacttgaatcggactgtgttgacaaacgattcatacgcccattt 346823  T
Q  122 agaagcttgaaacactagaactatgnnnnnnngcaattcggtttcgcgtccatacgtgggtgcgctggattgtc 195  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||| ||||||||||||||||    
T  346822 agaagcttgaaacactagaactatgtttttctgcaattcggtttcgcgtccatacgtaggtgcgctggattgtc 346749  T

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Target: chr7 (Bit Score: 116; Significance: 3e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 32864581 - 32864409
Alignment:
Q  22 ttggattggttcggcccgaaagggcatgtatgacttgatgtttagggagttgttggaacttgaatcggactgtgttgacagacgattcatacgcctattt 121  Q
    |||||||||||||||||| |||||| ||||||||||| |||||||||||||  ||||||||||||||||||||||||| |||||||||||| ||||||||    
T  32864581 ttggattggttcggcccggaagggcgtgtatgacttgctgtttagggagttactggaacttgaatcggactgtgttgatagacgattcatatgcctattt 32864482  T
Q  122 agaagcttgaaacactagaactatgnnnnnnngcaattcggtttcgcgtccatacgtgggtgcgctggattgt 194  Q
    |||||||||||| ||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  32864481 agaagcttgaaaaactagaactatgttattttacaattcggtttcgcgtccatacgtgggtgcgctggattgt 32864409  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 32868788 - 32868686
Alignment:
Q  23 tggattggttcggcccgaaagggcatgtatgacttgatgtttagggagttgttggaacttgaatcg-gactgtgttgacagacgattcatacgcctattt 121  Q
    ||||||||||  || ||||||||||| ||||| ||| || | ||||||||||||||||||| ||||    | ||||| ||||||| ||||||| ||||||    
T  32868788 tggattggttttgcacgaaagggcatttatgatttgctgataagggagttgttggaacttggatcgattatatgttggcagacgagtcatacgactattt 32868689  T
Q  122 aga 124  Q
    |||    
T  32868688 aga 32868686  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 8904798 - 8904758
Alignment:
Q  154 gcaattcggtttcgcgtccatacgtgggtgcgctggattgt 194  Q
    |||||| ||||||||||||| |||||||| |||||||||||    
T  8904798 gcaatttggtttcgcgtccacacgtgggttcgctggattgt 8904758  T

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Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 35247630 - 35247795
Alignment:
Q  22 ttggattggttcggcccgaaagggcatgtatgacttgatgtttagggagttgttggaacttgaatcggactgtgttgacagacgattcatacgcctattt 121  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||        ||||||||||    
T  35247630 ttggattggttcggcccgaaagggcgtgtatgacttgctgtttagggagttgctggaacttgaatcagactgtgttgacaga--------acgcctattt 35247721  T
Q  122 agaagcttgaaacactagaactatgnnnnnnngcaattcggtttcgcgtccatacgtgggtgcgctggattgtc 195  Q
    |||||||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||||    
T  35247722 agaagcttgaaacactagaactatgtttttttgcaatttggtttcgcgtccatacgtgggtgcgctggattgtc 35247795  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 17773736 - 17773636
Alignment:
Q  25 gattggttcggcccgaaagggcatgtatgacttgatgtttagggagttgttggaacttgaatc-ggactgtgttgacagacgattcatacgcctatttag 123  Q
    |||||| || |||| ||||||||| ||||||||||| || || ||||||||||||||||||||    |||||||| |||| ||||||||| |||||||||    
T  17773736 gattgggtcagcccaaaagggcatttatgacttgatattcagagagttgttggaacttgaatcatttctgtgttggcagatgattcatacacctatttag 17773637  T
Q  124 a 124  Q
    |    
T  17773636 a 17773636  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 15195921 - 15196023
Alignment:
Q  23 tggattggttcggcccgaaagggcatgtatgacttgatgtttagggagttgttggaacttgaatcg-gactgtgttgacagacgattcatacgcctattt 121  Q
    |||||||||| |||| |||||||  | |||||  |  |||||||||||||||||||||||||||||   |||||||| ||| |||||||||||||||| |    
T  15195921 tggattggtttggcctgaaagggtgtttatgatatcctgtttagggagttgttggaacttgaatcgtttctgtgttggcagccgattcatacgcctatct 15196020  T
Q  122 aga 124  Q
    |||    
T  15196021 aga 15196023  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 1954382 - 1954427
Alignment:
Q  154 gcaattcggtttcgcgtccatacgtgggtgcgctggattgtctgtg 199  Q
    ||||||||||||||||| ||||||||| | ||||| ||||||||||    
T  1954382 gcaattcggtttcgcgttcatacgtggattcgctgaattgtctgtg 1954427  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 12658614 - 12658655
Alignment:
Q  154 gcaattcggtttcgcgtccatacgtgggtgcgctggattgtc 195  Q
    ||||||||||||||| ||||||||||| || |||||||||||    
T  12658614 gcaattcggtttcgcatccatacgtggttgtgctggattgtc 12658655  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 25640454 - 25640413
Alignment:
Q  154 gcaattcggtttcgcgtccatacgtgggtgcgctggattgtc 195  Q
    |||||||||||||||| ||| |||||||| ||||||||||||    
T  25640454 gcaattcggtttcgcgcccacacgtgggttcgctggattgtc 25640413  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 25078631 - 25078476
Alignment:
Q  24 ggattggttcggcccgaaagggcatgtatgacttgatgtttagggagttgttggaacttgaatcg-gactgtgttgacagacgattcatacgcctattta 122  Q
    ||||||||||||||||||||||| | | ||| ||| ||||||||||||||||||||||||||| |   || ||||| ||||||||||||||||||||| |    
T  25078631 ggattggttcggcccgaaagggcgtttgtgatttgttgtttagggagttgttggaacttgaattgtttctctgttggcagacgattcatacgcctattca 25078532  T
Q  123 gaagcttgaaacactagaactatgnnnnnnngcaattcggtttcgcgtccatacgt 178  Q
     | |||  |||||||||  ||| |       ||||||| |||||||||||||||||    
T  25078531 aatgctctaaacactagctctacgtttttttgcaattcagtttcgcgtccatacgt 25078476  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 27900399 - 27900454
Alignment:
Q  26 attggttcggcccgaaagggcatgtatgacttgatgtttagggagttgttggaact 81  Q
    |||||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||    
T  27900399 attggttcggcctgaaagggcgtgtatgacttgttgtttagggggttgttggaact 27900454  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 32839281 - 32839197
Alignment:
Q  56 ttgatgtttagggagttgttggaacttgaatcg-gactgtgttgacagacgattcatacgcctatttagaagcttgaaacactag 139  Q
    ||||| |||||||||||||||||||||| ||||   |||||| |  ||| ||||||||||||||| |||| |||  |||||||||    
T  32839281 ttgatatttagggagttgttggaacttggatcgtttctgtgtaggtagatgattcatacgcctatctagatgctctaaacactag 32839197  T

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Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 21123123 - 21123187
Alignment:
Q  24 ggattggttcggcccgaaagggcatgtatgacttgatgtttagggagttgttggaacttgaatcg 88  Q
    ||||||||||| ||||||||||| | | ||||||| |||||||||||||||||||||||||||||    
T  21123123 ggattggttcgacccgaaagggcgtttgtgacttgctgtttagggagttgttggaacttgaatcg 21123187  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 15683721 - 15683684
Alignment:
Q  92 tgtgttgacagacgattcatacgcctatttagaagctt 129  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  15683721 tgtgttgacagacgattcatacgccaatttagaagctt 15683684  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 11152007 - 11151966
Alignment:
Q  154 gcaattcggtttcgcgtccatacgtgggtgcgctggattgtc 195  Q
    ||||||||||||||||  ||||||||||| ||||||||||||    
T  11152007 gcaattcggtttcgcgctcatacgtgggttcgctggattgtc 11151966  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 20489958 - 20489886
Alignment:
Q  12 tggacatcatttggattggttcggcccgaaagggcatgtatgacttgatgtttagggagttgttggaacttga 84  Q
    |||||| || |||||||||||||| | |||||||  | ||||||||| |||||||||||||||| ||||||||    
T  20489958 tggacaacaattggattggttcggtctgaaagggtgtttatgacttgttgtttagggagttgttagaacttga 20489886  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 8069593 - 8069649
Alignment:
Q  62 tttagggagttgttggaacttgaatcgga-ctgtgttgacagacgattcatacgcct 117  Q
    ||||||||||||||||| |||||||||   |||||||||||||||||||||||||||    
T  8069593 tttagggagttgttggaccttgaatcgtttctgtgttgacagacgattcatacgcct 8069649  T

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