View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12018_high_1 (Length: 871)
Name: NF12018_high_1
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 669; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 11 - 853
Target Start/End: Complemental strand, 45450222 - 45449378
Alignment:
| Q |
11 |
cagagatgccgtgtactgtagttctattattttagaaaagatcttccttaatttccatttttccagcatgggataaatatctagccttttagattcactt |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
45450222 |
cagagatgccgtgtactgtagttctattattttagaaaagatcttccgtaatttccatttttccagcatgggataaatatctagccttctagattcacat |
45450123 |
T |
|
| Q |
111 |
gaccatggactgggttgatcaattatgtgttggagaannnnnnnnnnnnnnnnn--gtaggaaataatcaaattagtaatatacttggacgagttgggat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45450122 |
gaccatggactgggttgatcaattatgtgttggagaattttttttatattttttttgtaggaaataatcaaattagtaatatacttggacgagttaggat |
45450023 |
T |
|
| Q |
209 |
atctccatttatgaaaataaatagagaaaatcatttaggtatagatatattcaaaaaagatacctggtcttcagttggcttatagtcgagatttcagagt |
308 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45450022 |
atctccatttatgaacataaatagagaaaatcatttaggtatagatatattcaaaaaagatacttggtcttcagttggcttatagtcgagatttcagagt |
45449923 |
T |
|
| Q |
309 |
tgttgaactttgtatagactaaatccatcctattatgagtatttagaagaagggtcaattgagtgcacaggttgaagattggtgtagaaaagtaatcatc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45449922 |
tgttgaactttgtatagactaaatccatcctattatgagtatttagaagaagggtcaattgagtgcacaggttgaagattggtgtagaaaagtaatcatc |
45449823 |
T |
|
| Q |
409 |
ttctagaatttgattgaaagattaaggtgtgtcattcataccgcgaagttgtgcnnnnnnnnnnnnnnnnnnnnnncaaaacaaaataagctttgggagt |
508 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||| |
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| T |
45449822 |
ttctagaatttgattgaaagattaaggtgtgtcattcatacggcgaagtggtgcttatttattttttatattttatcaaaacaaaataagctttgggagt |
45449723 |
T |
|
| Q |
509 |
gatgtcttgttgttgtgcttataggttatcttgcatcggaaattaaagaatcgaacctgagacattaacgagcatactccaaggtctcaagccaacacca |
608 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45449722 |
gatgtcttgttgttgtgcttataggttctcttgcatcggaaattaaagaatcgaacctgagacattaacgagcatactccaaggtctcaagccaacacca |
45449623 |
T |
|
| Q |
609 |
ctagatcaacttaagtggaaaactagaaaaatattacacttcaaattttatcaattgtgagaaggaagggaaagaaaatatttaaaatttgtttagttga |
708 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45449622 |
ctagatcatcttaagtggaaaactagaaaaatattacacttcaaattttatcaattgtgagaaggaagggaaagaaaatatttaaaatttgtttagttga |
45449523 |
T |
|
| Q |
709 |
tttttgcaaaaggaaggggagtagagcgaacttttctccattcatcattctagctacttgtaccaaccttgaatattgatcaatcataaacagatttaaa |
808 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45449522 |
tttttgcaaaaggaaggggaggagagcaaacttttctccattcatcattctagctacttgtaccaaccttgaatattgatcaatcataaacagatttaaa |
45449423 |
T |
|
| Q |
809 |
atatgtgagggaacaagttgaagtaccattttgtgatgatcctta |
853 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45449422 |
atatgtgagggaacaagttgaagtaccattttgtgatgatcctta |
45449378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 618
Target Start/End: Original strand, 10682969 - 10683008
Alignment:
| Q |
579 |
agcatactccaaggtctcaagccaacaccactagatcaac |
618 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
10682969 |
agcacactccaaggtctcaagccaataccactagatcaac |
10683008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 584 - 618
Target Start/End: Original strand, 10538290 - 10538324
Alignment:
| Q |
584 |
actccaaggtctcaagccaacaccactagatcaac |
618 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
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|
| T |
10538290 |
actccaaggtctcaagccaataccactagatcaac |
10538324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 609
Target Start/End: Original strand, 41470635 - 41470666
Alignment:
| Q |
578 |
gagcatactccaaggtctcaagccaacaccac |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
41470635 |
gagcatactccaaggtctcaagccaacaccac |
41470666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 555 - 612
Target Start/End: Complemental strand, 33560456 - 33560396
Alignment:
| Q |
555 |
agaatcgaacctgagacattaacgagcat---actccaaggtctcaagccaacaccactag |
612 |
Q |
| |
|
|||||||||| |||||| |||| ||| || ||||||||||||||||||||||||||||| |
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|
| T |
33560456 |
agaatcgaacatgagactttaaggaggatcacactccaaggtctcaagccaacaccactag |
33560396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 584 - 626
Target Start/End: Complemental strand, 47183367 - 47183325
Alignment:
| Q |
584 |
actccaaggtctcaagccaacaccactagatcaacttaagtgg |
626 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
47183367 |
actccaaggtctcaagccaacaccatcaggtcaacttaagtgg |
47183325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 611
Target Start/End: Original strand, 13747658 - 13747691
Alignment:
| Q |
578 |
gagcatactccaaggtctcaagccaacaccacta |
611 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
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|
| T |
13747658 |
gagcatactccaaggtcccaagccaacaccacta |
13747691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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