View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12018_high_14 (Length: 429)
Name: NF12018_high_14
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_high_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 220 - 416
Target Start/End: Original strand, 33585627 - 33585819
Alignment:
| Q |
220 |
tccccacttgtaagggaggacccccaaaattagcatgtgaataaaaatatagtaagaaaacgaaagccaatatataagagatgtttccaatcattgaatc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33585627 |
tccccacttgtaagggaggacccccaaaattagcatgtgaataaaaatatagtaagaaaacgaaagccaatatataagagatgtttccaatcatggaatc |
33585726 |
T |
|
| Q |
320 |
gtttgggtccttgtatatatgtactgtaacaatcggtgtttgcaacttgtaagctcaatgtcaactatcttctatttaactagtttgggtcctatgc |
416 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33585727 |
gtttgggtccttg----tatgtactgtaacaatcggtgtttgcaacttgtaagctcaatgtcaactatcttctatttaactagtttgggtcctatgc |
33585819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 36 - 159
Target Start/End: Original strand, 33585443 - 33585566
Alignment:
| Q |
36 |
ctccattcaatatgttcagtagattctcactgtataggtataaataatatcacatattcgcaagttaatactaataaaccaactgaggtgtgttcatata |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | | |||||| ||||| ||||| ||| |
|
|
| T |
33585443 |
ctccattcaatatgttcagtagattctcactgtataggtatatataatatcacatattcgcaaattaataccactggaccaaccaaggtgggttcacata |
33585542 |
T |
|
| Q |
136 |
ttgaagaagtaacatccttttatg |
159 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33585543 |
ttgaagaagtaacatccttttatg |
33585566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University