View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12018_high_15 (Length: 428)
Name: NF12018_high_15
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_high_15 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 41 - 428
Target Start/End: Original strand, 30016986 - 30017386
Alignment:
| Q |
41 |
aaaataagaacta--actttaactcaaagcagaaagagttgttattttgtatctttaggtcttttgtttgtttctatttgtttcatgtaggacttgaact |
138 |
Q |
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| T |
30016986 |
aaaataagaactataactttaactcaaagcagaaagagatgttattttgtatcttttggtcttttgtttgtttctatttgtttcatgtaggacttgaact |
30017085 |
T |
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| Q |
139 |
ttannnnnnnn-atcttattattttagtaatcagcagtgttatatcttgcgaaacatgcactcacgaagtgatcacgataacaaatggaccaacaagttg |
237 |
Q |
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| T |
30017086 |
ttttttttttttatcttattattttagtaatcagcagtgttatatgttgcgaaacatgcactcacgaagtgatcacgataacaaatggaccaacaagttg |
30017185 |
T |
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| Q |
238 |
ttattggacggaatacaccgagacttgtggaaatcatgggagtcaatttatgattatccaatcc-----aatataatataattaaaacatggcatttctg |
332 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
30017186 |
ttattggacggaatacaccgagacttgtggaaattatgggagtcgatttatgattatccaatccaatataatataatataattaaaacatggcagttctg |
30017285 |
T |
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| Q |
333 |
ctttcaggatgaatttgcgagtgattttttgagttaagtatcattttcctttagcagtattaagtggtg-----catagcaaaggaacactccccagatg |
427 |
Q |
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||||| | ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| |
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| T |
30017286 |
ctttcggaatgaatttgcgagtgatttttagagttaagtatcattttcctttagcaatattaagtggtgttattcatagcaaaggaacattccccagatg |
30017385 |
T |
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| Q |
428 |
t |
428 |
Q |
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| T |
30017386 |
t |
30017386 |
T |
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