View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12018_high_17 (Length: 405)

Name: NF12018_high_17
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12018_high_17
NF12018_high_17
[»] chr4 (3 HSPs)
chr4 (1-366)||(18152423-18152788)
chr4 (6-363)||(1785951-1786309)
chr4 (368-405)||(18152781-18152818)
[»] chr3 (2 HSPs)
chr3 (1-358)||(28371607-28371964)
chr3 (1-358)||(28379429-28379786)
[»] chr6 (2 HSPs)
chr6 (102-366)||(23936815-23937071)
chr6 (372-405)||(23937064-23937097)
[»] scaffold0002 (1 HSPs)
scaffold0002 (23-366)||(222920-223274)
[»] chr7 (6 HSPs)
chr7 (256-366)||(18637829-18637939)
chr7 (256-366)||(18651263-18651373)
chr7 (256-293)||(18605124-18605161)
chr7 (372-404)||(18605050-18605082)
chr7 (372-404)||(18637933-18637965)
chr7 (372-404)||(18651367-18651399)
[»] chr1 (1 HSPs)
chr1 (20-98)||(21288296-21288374)
[»] chr5 (2 HSPs)
chr5 (256-366)||(38578423-38578533)
chr5 (372-404)||(38578397-38578429)
[»] chr8 (2 HSPs)
chr8 (54-155)||(6532112-6532213)
chr8 (267-346)||(6532280-6532359)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 18152423 - 18152788
Alignment:
Q  1 tggtcttttttatctccgattactcgataatttccacaagcacaaatcccactttttataggcccaaaaattcgttcacaaaataatccatctttttcgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  18152423 tggtcttttttatctccgattactcgataatttccacaagcacaaatcccactttttataggcccaaaaattcgttcacaaaataatccatctttttcag 18152522  T
Q  101 gcttattggttttgtaatgaagagtatagggttttgttacctctccaacaatttctccattaggtaggannnnnnnngcccaagcacttatttgttcagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  18152523 gcttattggttttgtaatgaagagtatagggttttgttacctctccaacaatttctccattaggtaggattttttttgcccaagcacttatttgttcagg 18152622  T
Q  201 agaaactgatccaattcgaaggtgttgatgtttatactgatcaatcatagaataaaatttctgattcagtccaattaaacttccttcctttgaatctgga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18152623 agaaactgatccaattcgaaggtgttgatgtttatactgatcaatcatagaataaaatttctgattcagtccaattaaacttccttcctttgaatctgga 18152722  T
Q  301 agtctttctcagatacaaggaaatgattcagttccagagccaaagatcgtagttctcgaacgagca 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18152723 agtctttctcagatacaaggaaatgattcagttccagagccaaagatcgtagttctcgaacgagca 18152788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 6 - 363
Target Start/End: Complemental strand, 1786309 - 1785951
Alignment:
Q  6 ttttttatctccgattactcgataatttccacaagcacaaatcccactttttataggcccaaaaattcgttcacaaaataatccatctttttcgggctta 105  Q
    ||||||||||| ||||||||||||| | | ||||||||| |||||| |||||||| ||| |||||||| |||||||||||||||||||||||| | ||||    
T  1786309 ttttttatctctgattactcgataactcctacaagcacacatcccattttttatatgccaaaaaattctttcacaaaataatccatctttttcagactta 1786210  T
Q  106 ttggttttgtaatgaagagtatagggttttgttacctctccaacaatttctccattaggtaggannnnnnnn-gcccaagcacttatttgttcaggagaa 204  Q
    ||||| |||||||||| |||| |||||||||||||||| |||||||||||||||||| |||||          || |||||||||| ||||  |||| ||    
T  1786209 ttggtattgtaatgaaaagtaaagggttttgttacctccccaacaatttctccattatgtaggtttttcttttgctcaagcacttaattgtctaggaaaa 1786110  T
Q  205 actgatccaattcgaaggtgttgatgtttatactgatcaatcatagaataaaatttctgattcagtccaattaaacttccttcctttgaatctggaagtc 304  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |||||||||||||||| ||  ||||||||||||||||    
T  1786109 attgatccaattcgaaggtgttgatgtttatactgatcagtcatagaataaaacttatgattaagtccaattaaacttcattattttgaatctggaagtc 1786010  T
Q  305 tttctcagatacaaggaaatgattcagttccagagccaaagatcgtagttctcgaacga 363  Q
    ||||||| ||| |||||||||||||  ||||| ||| ||||||||||||||||||||||    
T  1786009 tttctcatatataaggaaatgattccattccaaagctaaagatcgtagttctcgaacga 1785951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 368 - 405
Target Start/End: Complemental strand, 18152818 - 18152781
Alignment:
Q  368 aacctgtggatgctccagaatcttttcgattgctcgtt 405  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18152818 aacctgtggatgctccagaatcttttcgattgctcgtt 18152781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 28371964 - 28371607
Alignment:
Q  1 tggtcttttttatctccgattactcgataatttccacaagcacaaatcccactttttataggcccaaaaattcgttcacaaaataatccatctttttcgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28371964 tggtcttttttatctccgattactcgataatttccacaagcacaaatcccactttttataggcccaaaaattcgttcacaaaataatccatctttttcag 28371865  T
Q  101 gcttattggttttgtaatgaagagtatagggttttgttacctctccaacaatttctccattaggtaggannnnnnnngcccaagcacttatttgttcagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  28371864 gcttattggttttgtaatgaagagtatagggttttgttacctctccaacaatttctccattaggtaggattttttttgcccaagcacttatttgttcagg 28371765  T
Q  201 agaaactgatccaattcgaaggtgttgatgtttatactgatcaatcatagaataaaatttctgattcagtccaattaaacttccttcctttgaatctgga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28371764 agaaactgatccaattcgaaggtgttgatgtttatactgatcaatcatagaataaaatttctgattcagtccaattaaacttccttcctttgaatctgga 28371665  T
Q  301 agtctttctcagatacaaggaaatgattcagttccagagccaaagatcgtagttctcg 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28371664 agtctttctcagatacaaggaaatgattcagttccagagccaaagatcgtagttctcg 28371607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 28379786 - 28379429
Alignment:
Q  1 tggtcttttttatctccgattactcgataatttccacaagcacaaatcccactttttataggcccaaaaattcgttcacaaaataatccatctttttcgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28379786 tggtcttttttatctccgattactcgataatttccacaagcacaaatcccactttttataggcccaaaaattcgttcacaaaataatccatctttttcag 28379687  T
Q  101 gcttattggttttgtaatgaagagtatagggttttgttacctctccaacaatttctccattaggtaggannnnnnnngcccaagcacttatttgttcagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  28379686 gcttattggttttgtaatgaagagtatagggttttgttacctctccaacaatttctccattaggtaggattttttttgcccaagcacttatttgttcagg 28379587  T
Q  201 agaaactgatccaattcgaaggtgttgatgtttatactgatcaatcatagaataaaatttctgattcagtccaattaaacttccttcctttgaatctgga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28379586 agaaactgatccaattcgaaggtgttgatgtttatactgatcaatcatagaataaaatttctgattcagtccaattaaacttccttcctttgaatctgga 28379487  T
Q  301 agtctttctcagatacaaggaaatgattcagttccagagccaaagatcgtagttctcg 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28379486 agtctttctcagatacaaggaaatgattcagttccagagccaaagatcgtagttctcg 28379429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 102 - 366
Target Start/End: Original strand, 23936815 - 23937071
Alignment:
Q  102 cttattggttttgtaatgaagagtatagggttttgttacctctccaacaatttctccattaggtaggannnnnnnngcccaagcacttatttgttcagga 201  Q
    |||||||||||||||| |||||||||| |||||||| |||| ||||||||||||||||||||| ||||        |||||| ||||||||| |||||||    
T  23936815 cttattggttttgtaacgaagagtataaggttttgtcacctgtccaacaatttctccattagggaggatttattt-gcccaatcacttatttattcagga 23936913  T
Q  202 gaaactgatccaattcgaaggtgttgatgtttatactgatcaatcatagaataaaatttctgattcagtccaattaaacttccttcctttgaatctggaa 301  Q
    |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23936914 gaaattgatccaactcgaaggtgttgatctttatactgatcaatcatagaataaaatttctgattcagtccaattaaacttccttcctttgaatttggaa 23937013  T
Q  302 gtctttctcagatacaaggaaatgattcagttccagagccaaagatcgtagttctcgaacgagca 366  Q
    ||||||||||||||||||||||||||||||||       ||||||| ||||||||||||||||||    
T  23937014 gtctttctcagatacaaggaaatgattcagtt-------caaagattgtagttctcgaacgagca 23937071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 372 - 405
Target Start/End: Complemental strand, 23937097 - 23937064
Alignment:
Q  372 tgtggatgctccagaatcttttcgattgctcgtt 405  Q
    |||||||||||||||||||||| |||||||||||    
T  23937097 tgtggatgctccagaatctttttgattgctcgtt 23937064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 23 - 366
Target Start/End: Complemental strand, 223274 - 222920
Alignment:
Q  23 ctcgataatttccacaagcacaaatcccactttttataggcccaaaaattcgttcacaaaataatccatctttttcgggcttattggttttgtaatgaag 122  Q
    ||||| |||| |||||| | |||||||| |||||||| || ||||| |||| ||| ||||| |||||||||||||| || |||| |||||| |||||||     
T  223274 ctcgagaattgccacaaccgcaaatcccgctttttatgggtccaaagattctttcgcaaaacaatccatctttttctggtttatcggttttataatgaaa 223175  T
Q  123 agtatagggttttgttacctctccaacaatttctccattaggtaggannnnnnnngcccaagcacttatttgttcaggagaaactgatccaattcgaagg 222  Q
    |||| ||||  |||| || || |||||   ||||||||||||||||         ||||||||  ||||||||| ||| |||||   ||||||| ||||     
T  223174 agtagagggccttgtgacttcgccaacggcttctccattaggtaggtttttgttagcccaagcctttatttgttgaggggaaacgagtccaatttgaagt 223075  T
Q  223 tgttgatgtttatactgatcaatcatagaata-aaat----------ttctgattcagtccaattaaacttccttcctttgaatctggaagtctttctca 311  Q
    |||||||||||||| || ||||||||| |||| ||||          ||   ||| | ||| || ||||||||| ||| | || ||||||||  || |||    
T  223074 tgttgatgtttatattggtcaatcataaaatagaaataagaaaagaatttatatttattccgatcaaacttcctccctattaacctggaagttcttttca 222975  T
Q  312 gatacaaggaaatgattcagttccagagccaaagatcgtagttctcgaacgagca 366  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  222974 gatacaaggaaatgattcagttctagagccaaagatcgtagttctcgaacgagca 222920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 256 - 366
Target Start/End: Original strand, 18637829 - 18637939
Alignment:
Q  256 aatttctgattcagtccaattaaacttccttcctttgaatctggaagtctttctcagatacaaggaaatgattcagttccagagccaaagatcgtagttc 355  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| |  ||||||||| || |||||||    
T  18637829 aatttctgattcagtccaattaaatttccttcctttgaatctgaaagtctttctcatatacaaggaaatgattcagcttaagagccaaatattgtagttc 18637928  T
Q  356 tcgaacgagca 366  Q
    | | |||||||    
T  18637929 ttgcacgagca 18637939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 256 - 366
Target Start/End: Original strand, 18651263 - 18651373
Alignment:
Q  256 aatttctgattcagtccaattaaacttccttcctttgaatctggaagtctttctcagatacaaggaaatgattcagttccagagccaaagatcgtagttc 355  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| |  ||||||||| || |||||||    
T  18651263 aatttctgattcagtccaattaaatttccttcctttgaatctgaaagtctttctcatatacaaggaaatgattcagcttaagagccaaatattgtagttc 18651362  T
Q  356 tcgaacgagca 366  Q
    | | |||||||    
T  18651363 ttgcacgagca 18651373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 18605161 - 18605124
Alignment:
Q  256 aatttctgattcagtccaattaaacttccttcctttga 293  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  18605161 aatttatgattcagtccaattaaatttccttcctttga 18605124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 404
Target Start/End: Original strand, 18605050 - 18605082
Alignment:
Q  372 tgtggatgctccagaatcttttcgattgctcgt 404  Q
    ||||||||||||| |||||||||||||||||||    
T  18605050 tgtggatgctccataatcttttcgattgctcgt 18605082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 404
Target Start/End: Complemental strand, 18637965 - 18637933
Alignment:
Q  372 tgtggatgctccagaatcttttcgattgctcgt 404  Q
    ||||||||||||| |||||||||||||||||||    
T  18637965 tgtggatgctccataatcttttcgattgctcgt 18637933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 404
Target Start/End: Complemental strand, 18651399 - 18651367
Alignment:
Q  372 tgtggatgctccagaatcttttcgattgctcgt 404  Q
    ||||||||||||| |||||||||||||||||||    
T  18651399 tgtggatgctccataatcttttcgattgctcgt 18651367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 21288296 - 21288374
Alignment:
Q  20 ttactcgataatttccacaagcacaaatcccactttttataggcccaaaaattcgttcacaaaataatccatctttttc 98  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21288296 ttactcgataatttccacaaacacaaatcccactttttataggcccaaaaattcgttcacaaaataatccatttttttc 21288374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 256 - 366
Target Start/End: Complemental strand, 38578533 - 38578423
Alignment:
Q  256 aatttctgattcagtccaattaaacttccttcctttgaatctggaagtctttctcagatacaaggaaatgattcagttccagagccaaagatcgtagttc 355  Q
    ||||||||||||||| |||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||  || ||||||||| || |||||||    
T  38578533 aatttctgattcagtacaattaaacttcattcctttgaatctgaaagtctttctcatatacaaggaaatgattcacctcaagagccaaatattgtagttc 38578434  T
Q  356 tcgaacgagca 366  Q
    | | |||||||    
T  38578433 ttgcacgagca 38578423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 404
Target Start/End: Original strand, 38578397 - 38578429
Alignment:
Q  372 tgtggatgctccagaatcttttcgattgctcgt 404  Q
    ||||||||||||| |||||||||||||||||||    
T  38578397 tgtggatgctccataatcttttcgattgctcgt 38578429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 6532112 - 6532213
Alignment:
Q  54 ttttataggcccaaaaattcgttcacaaaataatccatctttttcgggcttattggttttgtaatgaagagtatagggttttgttacctctccaacaatt 153  Q
    |||||||  |||| |||||| |||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||  |||||||||    
T  6532112 ttttatatccccacaaattctttcacaaaataatccatctttttcaggcatatttgttttgtaatgaagagtatagggttttgttaccttgccaacaatt 6532211  T
Q  154 tc 155  Q
    ||    
T  6532212 tc 6532213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 6532280 - 6532359
Alignment:
Q  267 cagtccaattaaacttccttcctttgaatctggaagtctttctcagatacaaggaaatgattcagttccagagccaaaga 346  Q
    |||||||| ||||||   || |||||||||||||| |||| |||||||| |||||||  |||| |||| |||||||||||    
T  6532280 cagtccaaataaactcattttctttgaatctggaaatcttcctcagatataaggaaacaattccgttcaagagccaaaga 6532359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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