View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12018_high_2 (Length: 780)

Name: NF12018_high_2
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12018_high_2
NF12018_high_2
[»] chr7 (1 HSPs)
chr7 (1-764)||(40382978-40383741)


Alignment Details
Target: chr7 (Bit Score: 740; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 1 - 764
Target Start/End: Original strand, 40382978 - 40383741
Alignment:
Q  1 gctaaaatggtgaaaaagtaaaagaggaaaccagatgtcccgccggcaagtccaacagaccaaaaagtggtgacggagaaggcgaaggagaggaagatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40382978 gctaaaatggtgaaaaagtaaaagaggaaaccagatgtcccgccggcaagtccaacagaccaaaaagtggtgacggagaaggcgaaggagaggaagatga 40383077  T
Q  101 gtgcagggagagagatgatggagtgtgcaaggacataggaagaacgacggtaagcgttgtaagcagtttctctcatgaaaatgtaacgctcttgaaggaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383078 gtgcagggagagagatgatggagtgtgcaaggacataggaagaacgacggtaagcgttgtaagcagtttctctcatgaaaatgtaacgctcttgaaggaa 40383177  T
Q  201 aacggggatagcttcagcacaagtgtagaaggttgttgacatggcaaaggcgaagaaacccaaacgctcttgaacaccttttggtgaatcgtcaagacgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383178 aacggggatagcttcagcacaagtgtagaaggttgttgacatggcaaaggcgaagaaacccaaacgctcttgaacaccttttggtgaatcgtcaagacgg 40383277  T
Q  301 taaaagatggtggccaagattcctccggtaaccagaactgcaccgagacggattccgaataattccggcatccgtcttgagtttagtagagaccgttttc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383278 taaaagatggtggccaagattcctccggtaaccagaactgcaccgagacggattccgaataattccggcatccgtcttgagtttagtagagaccgttttc 40383377  T
Q  401 caataactgccatttcaatccaaaacggatttgcaaaagtggcaactgaggacgcaattgagttaccgtttccattaccaccattagttcctgagactaa 500  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  40383378 caataaccgccatttcaatccaaaacggatttgcaaaagtggcaactgaggacgcaattgagttaccgttgccattaccaccgttagttcctgagactaa 40383477  T
Q  501 tttccctcttgagatactggcactgatggcgtcttttaacgacattttaggtccgttaacggcagttacagatgctggtttatactttaactgccatgac 600  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383478 tttccctcttgagatactcgcactgatggcgtcttttaacgacattttaggtccgttaacggcagttacagatgctggtttatactttaactgccatgac 40383577  T
Q  601 ttgttgaactctacaaggctttttgttcctccgggagtctcttcaagctcacggattagatccagtgcgaattctgtcttgttctcgttttctggtatgg 700  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383578 ttgttgaactctacaaggctttttgttcctccgggattttcttcaagctcacggattagatccagtgcgaattctgtcttgttctcgttttctggtatgg 40383677  T
Q  701 gatggccgaattcatggaaaaaactagggaggttcgccggagagccgctgtagacggtttgtcc 764  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383678 gatggccgaattcatggaaaaaactagggaggttcgccggagagccgctgtagacggtttgtcc 40383741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University