View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12018_high_20 (Length: 388)
Name: NF12018_high_20
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_high_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 25634549 - 25634918
Alignment:
| Q |
18 |
gtggggtttaatgtcaatcagtgtgtgttatgtgtaacaatgatgttgaggacgaaaagcacatgttcatggattgcacttttgctgtaaatcgttggaa |
117 |
Q |
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| T |
25634549 |
gtggggtttaatgtcaatcagtgtgtgttatgtgtaacaatgatgttgaggacgaaaagcacatgttcatggattgcacttttgctgtaaatcgttggaa |
25634648 |
T |
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| Q |
118 |
ggaaactaatctttggaataaaatagaccgctatgtgactgcaagtggtagtttttccttcattattttcagcatccttaccgaccttgatgcacaaaaa |
217 |
Q |
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| T |
25634649 |
ggaaactaatctttggaataaaatagaccgctatgtgactgcaagtggtagtttttccttcattattttcagcatccttaccgaccttgatgcacaaaaa |
25634748 |
T |
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| Q |
218 |
cgtgctcgcttttcagctattatgtggagtatttggcgttcacacaattcttgcttatgggaacagaagctnnnnnnnnnttcaatcaaaaccgacccat |
317 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25634749 |
cgtgctcggttttcagctattatgtggagtattttgcgttcacacaattcttgcttatgggaacagaagctaaaaaaaaattcaatcaaaaccgacccat |
25634848 |
T |
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| Q |
318 |
tgttgtttattttaaaatacatactctgagagttgtttttgttcgttctgtttacaa-taccgaactcattc |
388 |
Q |
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|||||||||||||||||||| || |||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
25634849 |
tgttgtttattttaaaatacgta--ctgagagttgtttttgttagttctgtttacaattaccgaactcattc |
25634918 |
T |
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