View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12018_high_21 (Length: 384)
Name: NF12018_high_21
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 12 - 368
Target Start/End: Original strand, 41279990 - 41280341
Alignment:
| Q |
12 |
gagaacacccatcttcattccccataggaaattattttccccaaccttatccccgaagattcctacgg-ttttttggagatcccatcaacataaaaaacc |
110 |
Q |
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| T |
41279990 |
gagaacacccatcttcattccccataggaaattattttccccaaccttatcctcgaagattcctacggtttttttggagatcccattaacataaaaaatc |
41280089 |
T |
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| Q |
111 |
aattctattttaannnnnnncaacaaattagtagtaaaataacttaaaatttgtccataaaagaaaatcatcattgcacatnnnnnnnnttatacgtata |
210 |
Q |
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| T |
41280090 |
aattctatttt-----ttttcaacaaattagtagtaaaataacttaaaatttgtccataaaagaaaatcatcattgcatataaaaaaaattatacgtata |
41280184 |
T |
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| Q |
211 |
tttttat-gaaagataaatcaataacatacaaaatacacatatacaaaagttatttaaaatttgttnnnnnnntatattttaatgaaatgtttcgagtct |
309 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| | |||||||||||| |||| || ||| |
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| T |
41280185 |
tttttatagaaagataaatcaataacatacaaaatacacaaatacaaaaattatttaaaatttgttaaaaaaatgtattttaatgaagtgttcggaatct |
41280284 |
T |
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| Q |
310 |
ctgcaaagcaaatatatgatccccatccatgtcttcaaaccactctctcccacgtccct |
368 |
Q |
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| T |
41280285 |
ctgcaaagcaaatatatgatccccatccatgtcttcaaacca--ctctcccacgtccct |
41280341 |
T |
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