View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12018_high_24 (Length: 348)

Name: NF12018_high_24
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12018_high_24
NF12018_high_24
[»] chr3 (8 HSPs)
chr3 (168-348)||(43000314-43000494)
chr3 (5-76)||(43747787-43747858)
chr3 (1-72)||(46235467-46235538)
chr3 (3-72)||(38888375-38888444)
chr3 (25-76)||(40686983-40687034)
chr3 (10-67)||(8319945-8320002)
chr3 (1-76)||(34672609-34672684)
chr3 (3-76)||(5175598-5175672)
[»] chr5 (7 HSPs)
chr5 (1-76)||(7529761-7529836)
chr5 (1-76)||(35467990-35468065)
chr5 (19-76)||(38761292-38761349)
chr5 (25-76)||(6377491-6377542)
chr5 (1-72)||(11001316-11001388)
chr5 (36-76)||(24905415-24905455)
chr5 (36-76)||(32657930-32657970)
[»] chr7 (12 HSPs)
chr7 (1-76)||(2430624-2430699)
chr7 (1-67)||(37566293-37566359)
chr7 (19-76)||(43637382-43637439)
chr7 (12-69)||(38125597-38125654)
chr7 (1-76)||(2088323-2088398)
chr7 (25-76)||(40786316-40786367)
chr7 (10-65)||(41988024-41988079)
chr7 (2-69)||(42271079-42271146)
chr7 (25-67)||(46460056-46460098)
chr7 (25-69)||(33249547-33249591)
chr7 (36-76)||(34996754-34996794)
chr7 (36-76)||(46290512-46290552)
[»] chr8 (7 HSPs)
chr8 (1-76)||(27631582-27631657)
chr8 (5-76)||(24100704-24100775)
chr8 (1-76)||(26747927-26748002)
chr8 (1-76)||(43638382-43638458)
chr8 (1-64)||(9990870-9990934)
chr8 (42-76)||(33449342-33449376)
chr8 (36-76)||(31666251-31666291)
[»] chr1 (6 HSPs)
chr1 (1-76)||(4795949-4796024)
chr1 (1-76)||(25659004-25659079)
chr1 (1-76)||(8170417-8170492)
chr1 (6-67)||(46085620-46085681)
chr1 (2-69)||(30725816-30725884)
chr1 (27-67)||(46600285-46600325)
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-76)||(27961-28036)
[»] chr4 (6 HSPs)
chr4 (1-76)||(49233258-49233333)
chr4 (1-69)||(49889252-49889320)
chr4 (6-76)||(53921932-53922002)
chr4 (1-76)||(50381950-50382025)
chr4 (38-76)||(6447103-6447141)
chr4 (1-67)||(30658126-30658193)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-76)||(67787-67863)
[»] chr2 (3 HSPs)
chr2 (1-68)||(8588477-8588545)
chr2 (42-76)||(5077182-5077216)
chr2 (36-76)||(38376443-38376483)
[»] scaffold1844 (1 HSPs)
scaffold1844 (1-37)||(97-133)
[»] chr6 (1 HSPs)
chr6 (25-76)||(32818609-32818660)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 168 - 348
Target Start/End: Original strand, 43000314 - 43000494
Alignment:
Q  168 ttagagaaaaagggaataatcgcaatctgatactatcatcacataatgcatcacatttcaaggtgctacaagtttctacaaattcgtttagatgcatttt 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43000314 ttagagaaaaagggaataatcgcaatctgatactatcatcacatagtgcatcacatttcaaggtgctacaagtttctacaaattcgtttagatgcatttt 43000413  T
Q  268 gggatcttcagagggtaacccgccaaactgattgaatgcccggatagaacgaatcaaagatgagaggtcgtaactaacatc 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43000414 gggatcttcagagggtaacccgccaaactgattgaatgcccggatagaacgaatcaaagatgagaggtcgtaactaacatc 43000494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 43747858 - 43747787
Alignment:
Q  5 tttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||||||||||||||| ||||||| || |||||||||||| ||||||||||||||||||||||||||||    
T  43747858 tttttaaaaataataacatttctttctcttctatttctctcttctttctcttataccaaacaatacatcaaa 43747787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 46235467 - 46235538
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacat 72  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||| ||||||||||||||||||||||||    
T  46235467 tgtctttttaaaaataataacatttctttctcttctatttctctcttctttctcttataccaaacaatacat 46235538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 38888375 - 38888444
Alignment:
Q  3 tctttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacat 72  Q
    ||||||||||||||| ||||| ||||||| || |||||||||||| |||||| | |||||||||||||||    
T  38888375 tctttttaaaaataacaacatttctttctcttctatttctctcttctttctcctgtaccaaacaatacat 38888444  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 40686983 - 40687034
Alignment:
Q  25 tctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||| || | |||||||||| ||||||||||||||||||||||||||||    
T  40686983 tctttctcttctttttctctcttctttctcttataccaaacaatacatcaaa 40687034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 8320002 - 8319945
Alignment:
Q  10 aaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaa 67  Q
    ||||| ||||| || ||||||| || |||||||||||| |||||||||||||||||||    
T  8320002 aaaaacaataatatttctttctcttctatttctctcttctttctcttataccaaacaa 8319945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 34672609 - 34672684
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    |||||||| ||||||||| |||  ||||||| || |||||||||||| ||||||||| | |||||||  |||||||    
T  34672609 tgtcttttaaaaaataatcacacttctttctcttctatttctctcttctttctcttacatcaaacaacccatcaaa 34672684  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 5175598 - 5175672
Alignment:
Q  3 tctttttaa-aaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||||| ||||||||| |  ||||||  || |||||||||||| ||| ||||||||||||||||| ||||||    
T  5175598 tctttttaataaataataatacttctttcacttgtatttctctcttatttgtcttataccaaacaatatatcaaa 5175672  T

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Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 7529836 - 7529761
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  7529836 tgtctttttaaaaataataacatttctttctcttctatttctctcttttttctcttataccaaacaatacatcaaa 7529761  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 35467990 - 35468065
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||||||||||||||| ||| ||||||| || |||||||||||| ||||||||||||||||||||||||||||    
T  35467990 tgtctttttaaaaataatagcatttctttctcttctatttctctcttctttctcttataccaaacaatacatcaaa 35468065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 38761292 - 38761349
Alignment:
Q  19 aacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||| ||||||| ||||||||||||||| |||||||||||||||||||  |||||||    
T  38761292 aacatctctttctcttatatttctctcttctttctcttataccaaacaacccatcaaa 38761349  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 6377542 - 6377491
Alignment:
Q  25 tctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||| || ||||| |||||||||||||||||||||||||| ||||||||    
T  6377542 tctttctcttctatttttctcttttttctcttataccaaacaacacatcaaa 6377491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 11001316 - 11001388
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttc-tattatatttctctcttttttctcttataccaaacaatacat 72  Q
    |||||||||||||||||| |||  | |||| | || |||||||||||| ||||||||||||||| ||| ||||    
T  11001316 tgtctttttaaaaataatcacacttttttcctcttctatttctctcttctttctcttataccaatcaacacat 11001388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 24905415 - 24905455
Alignment:
Q  36 tatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    |||||||||||| | |||||| |||||||||||||||||||    
T  24905415 tatttctctcttctctctcttttaccaaacaatacatcaaa 24905455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 32657970 - 32657930
Alignment:
Q  36 tatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||||||||| ||||| |||||||||||||| ||||||    
T  32657970 tatttctctctttcttctcatataccaaacaatatatcaaa 32657930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 2430699 - 2430624
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||| ||||||||||||||||||||||||||||    
T  2430699 tgtctttttaaaaataataacatttctttctcttctatttctctcttctttctcttataccaaacaatacatcaaa 2430624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37566359 - 37566293
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaa 67  Q
    |||||||| ||||||||| |||| ||||||| || |||||||||||| ||||||||||| |||||||    
T  37566359 tgtcttttaaaaaataatcacatttctttctcttctatttctctcttctttctcttatatcaaacaa 37566293  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 43637439 - 43637382
Alignment:
Q  19 aacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||| ||||||| ||||||||||||||| |||||||||||||||||||  |||||||    
T  43637439 aacatctctttctcttatatttctctcttctttctcttataccaaacaacccatcaaa 43637382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 38125654 - 38125597
Alignment:
Q  12 aaataataacatgtctttctattatatttctctcttttttctcttataccaaacaata 69  Q
    |||||||||||| ||||||| ||||| ||||||||| |||||||||| | ||||||||    
T  38125654 aaataataacatatctttctcttatacttctctcttatttctcttatgctaaacaata 38125597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 2088398 - 2088323
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    |||||||| ||||||||| |||  | ||||| || |||||||||||| ||||||||||| |||||||  |||||||    
T  2088398 tgtcttttaaaaaataatcacacttttttctcttctatttctctcttctttctcttatatcaaacaactcatcaaa 2088323  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 40786316 - 40786367
Alignment:
Q  25 tctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||| || ||||| | |||||| ||||||||||||||||||||||||||    
T  40786316 tctttctcttctatttgtatcttttctctcttataccaaacaatacatcaaa 40786367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 41988079 - 41988024
Alignment:
Q  10 aaaaataataacatgtctttctattatatttctctcttttttctcttataccaaac 65  Q
    ||||| ||||| || ||||||| || |||||||||| |||||||||||||||||||    
T  41988079 aaaaacaataatatctctttctcttttatttctctcatttttctcttataccaaac 41988024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 42271146 - 42271079
Alignment:
Q  2 gtctttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaata 69  Q
    ||||||||||||||||  |||  ||||||| || |||||||||  ||| |||||||||||||||||||    
T  42271146 gtctttttaaaaataaacacacttctttctcttctatttctcttctttctctcttataccaaacaata 42271079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 46460056 - 46460098
Alignment:
Q  25 tctttctattatatttctctcttttttctcttataccaaacaa 67  Q
    ||||||| || |||||||||||| |||||||||||||||||||    
T  46460056 tctttctcttctatttctctcttctttctcttataccaaacaa 46460098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 33249547 - 33249591
Alignment:
Q  25 tctttctattatatttctctcttttttctcttataccaaacaata 69  Q
    ||||||| || ||||||||||||| ||||||| ||||||||||||    
T  33249547 tctttctcttctatttctctctttcttctcttgtaccaaacaata 33249591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 34996754 - 34996794
Alignment:
Q  36 tatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  34996754 tatttctcttctttctctcttataccaaacaatacatcaaa 34996794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 46290552 - 46290512
Alignment:
Q  36 tatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||||||||| ||||||| ||||||||||| |||||||    
T  46290552 tatttctctctttcttctcttgtaccaaacaatccatcaaa 46290512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 27631657 - 27631582
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||| ||||| ||||||||||||||||||||||    
T  27631657 tgtctttttaaaaataataacatttctttctcttctatttctctcttctttcttttataccaaacaatacatcaaa 27631582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 24100775 - 24100704
Alignment:
Q  5 tttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||||||||||||||| ||||||| || ||||||||| || ||||||||||||||||||||||||||||    
T  24100775 tttttaaaaataataacatttctttcttttctatttctctattctttctcttataccaaacaatacatcaaa 24100704  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 26747927 - 26748002
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    |||||||| |||||||||||||| ||||||| || |||||||||||| |||||||||||||| |||||||||||||    
T  26747927 tgtcttttaaaaaataataacatttctttctcttctatttctctcttctttctcttataccatacaatacatcaaa 26748002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 43638382 - 43638458
Alignment:
Q  1 tgtctttttaaaa-ataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    |||||||||| || |||||||||| ||  ||| || ||||||||| || ||||||||||||||||||||||||||||    
T  43638382 tgtctttttagaatataataacatctcactctcttctatttctcttttctttctcttataccaaacaatacatcaaa 43638458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 9990934 - 9990870
Alignment:
Q  1 tgtctttttaaaaat-aataacatgtctttctattatatttctctcttttttctcttataccaaa 64  Q
    ||||||||||||||  ||||| || ||||||| || |||||||||||| ||||||||||||||||    
T  9990934 tgtctttttaaaaaacaataatatctctttctcttctatttctctcttctttctcttataccaaa 9990870  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 33449376 - 33449342
Alignment:
Q  42 tctcttttttctcttataccaaacaatacatcaaa 76  Q
    |||||| ||||||||||||||||||||||||||||    
T  33449376 tctcttatttctcttataccaaacaatacatcaaa 33449342  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 31666291 - 31666251
Alignment:
Q  36 tatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    |||||||||| | ||||| ||||||||||||||||||||||    
T  31666291 tatttctctcatctttcttttataccaaacaatacatcaaa 31666251  T

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Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4796024 - 4795949
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||| |||||||||||||||| |||||||||||    
T  4796024 tgtctttttaaaaataataacatttctttctcttctatttctctcttctttctcttataccaaataatacatcaaa 4795949  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 25659079 - 25659004
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||||||||||||||| ||| ||||||| || |||||||||||| ||||||||||||||||||||||||||||    
T  25659079 tgtctttttaaaaataatatcatttctttctcttctatttctctcttctttctcttataccaaacaatacatcaaa 25659004  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8170492 - 8170417
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||| ||||||||||| |||| |||||||||||    
T  8170492 tgtctttttaaaaataataacatttctttctcttctatttctctcttctttctcttatatcaaataatacatcaaa 8170417  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 46085681 - 46085620
Alignment:
Q  6 ttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaa 67  Q
    ||||||||| | || ||| ||||||| || |||||||||||| |||||||||||||||||||    
T  46085681 ttttaaaaaaagtagcatctctttctcttctatttctctcttctttctcttataccaaacaa 46085620  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 30725816 - 30725884
Alignment:
Q  2 gtctttttaaaaa-taataacatgtctttctattatatttctctcttttttctcttataccaaacaata 69  Q
    ||||||||||||| |||  |||| ||||||| || |||||||||  ||| |||||||||||||||||||    
T  30725816 gtctttttaaaaactaaacacatttctttctcttctatttctcttctttctctcttataccaaacaata 30725884  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 46600325 - 46600285
Alignment:
Q  27 tttctattatatttctctcttttttctcttataccaaacaa 67  Q
    ||||| || |||||||||||| |||||||||||||||||||    
T  46600325 tttctcttctatttctctcttctttctcttataccaaacaa 46600285  T

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Target: scaffold0096 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 27961 - 28036
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||||||||||||||||||| ||| ||| || |||||||||||| |||||||||| |||||||||||||||||    
T  27961 tgtctttttaaaaataataacatttctctctcttctatttctctcttctttctcttatgccaaacaatacatcaaa 28036  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 49233258 - 49233333
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||||||||||||||||||| | ||||| || |||||||||||| ||| |||||||||||| |||||||||||    
T  49233258 tgtctttttaaaaataataacatttgtttctcttctatttctctcttctttatcttataccaaagaatacatcaaa 49233333  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 49889320 - 49889252
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaata 69  Q
    ||||||||||||||||||| ||| | ||||| || ||||||| |||| |||||||||||||||||||||    
T  49889320 tgtctttttaaaaataatagcatttatttctcttctatttctatcttctttctcttataccaaacaata 49889252  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 53921932 - 53922002
Alignment:
Q  6 ttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    |||| ||||||||||||| | ||| | || |||||||||||| ||||| ||||||||||||||||||||||    
T  53921932 ttttgaaaataataacatttttttttcttctatttctctcttctttcttttataccaaacaatacatcaaa 53922002  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 50382025 - 50381950
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    |||||||| ||||| |||  ||| ||||||| || |||||||||||| |||||||||||||||||||  |||||||    
T  50382025 tgtcttttcaaaaaaaattgcatctctttctcttctatttctctcttctttctcttataccaaacaacccatcaaa 50381950  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 6447141 - 6447103
Alignment:
Q  38 tttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  6447141 tttctctcttctttctcttataccaaacaatacatcaaa 6447103  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 30658126 - 30658193
Alignment:
Q  1 tgtctttttaaaaat-aataacatgtctttctattatatttctctcttttttctcttataccaaacaa 67  Q
    ||||||||||||||  |||||||| ||||| | || |||||||||||| ||||| |||||||||||||    
T  30658126 tgtctttttaaaaaacaataacatctctttatcttctatttctctcttctttctattataccaaacaa 30658193  T

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Target: scaffold0060 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 67787 - 67863
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttctattatatttctctcttttttctcttatacc-aaacaatacatcaaa 76  Q
    ||||||||||||||||||||||| ||||||| || ||||| |||||| ||||||||||||| ||| |||||||||||    
T  67787 tgtctttttaaaaataataacatttctttctcttctatttatctcttctttctcttataccaaaataatacatcaaa 67863  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 8588545 - 8588477
Alignment:
Q  1 tgtctttttaaa-aataataacatgtctttctattatatttctctcttttttctcttataccaaacaat 68  Q
    |||||||||||| |||| |||||| ||||||| || |||||||||||| ||||||||||||||||||||    
T  8588545 tgtctttttaaagaatagtaacatctctttctcttctatttctctcttctttctcttataccaaacaat 8588477  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 5077216 - 5077182
Alignment:
Q  42 tctcttttttctcttataccaaacaatacatcaaa 76  Q
    |||||| ||||||||||||||||||||||||||||    
T  5077216 tctcttctttctcttataccaaacaatacatcaaa 5077182  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 38376443 - 38376483
Alignment:
Q  36 tatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||||||||| ||||||| ||||||||||| |||||||    
T  38376443 tatttctctctttcttctcttgtaccaaacaatccatcaaa 38376483  T

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Target: scaffold1844 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold1844
Description:

Target: scaffold1844; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 97 - 133
Alignment:
Q  1 tgtctttttaaaaataataacatgtctttctattata 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  97 tgtctttttaaaaataataacatgtctttctattata 133  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 32818609 - 32818660
Alignment:
Q  25 tctttctattatatttctctcttttttctcttataccaaacaatacatcaaa 76  Q
    ||||||| || |||||||||||| |||||||||||||||||||  |||||||    
T  32818609 tctttctcttctatttctctcttctttctcttataccaaacaacccatcaaa 32818660  T

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