View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12018_high_25 (Length: 346)
Name: NF12018_high_25
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 336
Target Start/End: Complemental strand, 5421467 - 5421151
Alignment:
| Q |
20 |
acgaaagccacgaataagtgctctactcggaatggatcgtgcaaactcgaccnnnnnnnccctatcacatattatttagttctaacagcgccaaaaaatg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5421467 |
acgaaagccacgaataagtgctctactcggaatggatcgtgcaaactcgacctttttttccctatcacatattatttagttctaacagcgccaaaaaatg |
5421368 |
T |
|
| Q |
120 |
taagactaactaattattgctatcattcatatcatcttattgtatannnnnnncaatgtatattcattatggttcctatgaattgactacagggaaatga |
219 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5421367 |
taagactaactaattattgctataattcatatcatattattgtatatttttttcaatgtatattcattatggttcctatgtattgactacagggaaatga |
5421268 |
T |
|
| Q |
220 |
tgatgatgatgcatggtttgttgaaatttcttttatggctcgtgttttttcatacataatccttctaggtaccttaaattaaactattattaatttatga |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5421267 |
tgatgatgatgcatggtttgttgaaatttcttttatggctcgtgttttttcatacataatccttttaggtaccttaaattaaactattattaatttatga |
5421168 |
T |
|
| Q |
320 |
aaactttgtttcctatg |
336 |
Q |
| |
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||||||||||||||||| |
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| T |
5421167 |
aaactttgtttcctatg |
5421151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 101 - 280
Target Start/End: Complemental strand, 2683242 - 2683063
Alignment:
| Q |
101 |
ctaacagcgccaaaaaatgtaagactaactaattattgctatcattcatatcatcttattgtatannnnnnncaatgtatattcattatggttcctatga |
200 |
Q |
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|||||| | ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
2683242 |
ctaacaacaccaaaaaatgtaagactaagtgattattgctataattcatatcatcttattgtatattcttttcaatgtatattcattatggtgcctatga |
2683143 |
T |
|
| Q |
201 |
attgactacagggaaatgatgatgatgatgcatggtttgttgaaatttcttttatggctcgtgttttttcatacataatc |
280 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2683142 |
attgattacagggaaataatgatgatgatgcatggtttgttgaaatttcttttatggctcgtgttttttcctacataatc |
2683063 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 2683061 - 2683029
Alignment:
| Q |
304 |
tattattaatttatgaaaactttgtttcctatg |
336 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |
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|
| T |
2683061 |
tattattattttatgaaaactttgtttcctatg |
2683029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 101 - 280
Target Start/End: Original strand, 5480069 - 5480248
Alignment:
| Q |
101 |
ctaacagcgccaaaaaatgtaagactaactaattattgctatcattcatatcatcttattgtatannnnnnncaatgtatattcattatggttcctatga |
200 |
Q |
| |
|
|||||| | ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
5480069 |
ctaacaacaccaaaaaatgtaagactaagtgattattgctataattcatatcatcttattgtatattcttttcaatgtatattcattatggtgcctatga |
5480168 |
T |
|
| Q |
201 |
attgactacagggaaatgatgatgatgatgcatggtttgttgaaatttcttttatggctcgtgttttttcatacataatc |
280 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5480169 |
attgattacagggaaataatgatgatgatgcatggtttgttgaaatttcttttatggctcgtgttttttcctacataatc |
5480248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 336
Target Start/End: Original strand, 5480250 - 5480282
Alignment:
| Q |
304 |
tattattaatttatgaaaactttgtttcctatg |
336 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
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|
| T |
5480250 |
tattattattttatgaaaactttgtttcctatg |
5480282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 101 - 280
Target Start/End: Complemental strand, 45006668 - 45006489
Alignment:
| Q |
101 |
ctaacagcgccaaaaaatgtaagactaactaattattgctatcattcatatcatcttattgtatannnnnnncaatgtatattcattatggttcctatga |
200 |
Q |
| |
|
|||||| | ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
45006668 |
ctaacaacaccaaaaaatgtaagactaagtgattattgctataattcatatcatcttattgtatattcttttcaatgtatattcattatggtgcctatga |
45006569 |
T |
|
| Q |
201 |
attgactacagggaaatgatgatgatgatgcatggtttgttgaaatttcttttatggctcgtgttttttcatacataatc |
280 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45006568 |
attgattacagggaaataatgatgatgatgcatggtttgttgaaatttcttttatggctcgtgttttttcctacataatc |
45006489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 45006487 - 45006455
Alignment:
| Q |
304 |
tattattaatttatgaaaactttgtttcctatg |
336 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
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|
| T |
45006487 |
tattattattttatgaaaactttgtttcctatg |
45006455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 101 - 282
Target Start/End: Original strand, 34217507 - 34217692
Alignment:
| Q |
101 |
ctaacagcgccaaaaaatgtaagactaactaa----ttattgctatcattcatatcatcttattgtatannnnnnncaatgtatattcattatggttcct |
196 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34217507 |
ctaacagcaccaaaaaatgtaagactaattaagtgattattgctataattcatatcatcttattgtatattcttttcaatgtatattcattatggttccc |
34217606 |
T |
|
| Q |
197 |
atgaattgactacagggaaatgatgatgatgatgcatggtttgttgaaatttcttttatggctcgtgttttttcatacataatcct |
282 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34217607 |
atgaattgattacagggaaataatgatgatgatgcatggttttttgaaatttcttttatggctcgtgttttttcctacataatcct |
34217692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 336
Target Start/End: Original strand, 34217704 - 34217736
Alignment:
| Q |
304 |
tattattaatttatgaaaactttgtttcctatg |
336 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
34217704 |
tattattattttatgaaaactttgtttcctatg |
34217736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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