View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12018_high_29 (Length: 323)
Name: NF12018_high_29
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_high_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 49464045 - 49464336
Alignment:
| Q |
14 |
cagagaaaagtgatgtatacagctatgggatggtattgctagagattattggtggaaggaagaactatgatactaatgagagttcagagaaaagctattt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49464045 |
cagagaaaagtgatgtatacagctatgggatggtattgctagagattattggtggaaggaagaactatgatactaatgagagttcagagaaaagttattt |
49464144 |
T |
|
| Q |
114 |
ccctagttttgcttttaagatgatggaagaagggaaagtgagagatatacttgattccgagctgaaaattgatgagcatgatgatagggttcaatgtgct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49464145 |
ccctagttttgcttttaagatgatggaagaagggaaagtgagagatatacttgattccgagctgaaaattgatgagcatgatgatagggttcaatgtgct |
49464244 |
T |
|
| Q |
214 |
ataagggttgcattgtggtgtatacaagaagacatgtctatgagaccttcaatgaccaaagttgttcaaatgttggagggtctctgcactgt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49464245 |
ataagggttgcattgtggtgtatacaagaagacatgtctatgagaccttcaatgaccaaagttgttcaaatgttggagggtctctgcactgt |
49464336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 305
Target Start/End: Complemental strand, 33800454 - 33800160
Alignment:
| Q |
14 |
cagagaaaagtgatgtatacagctatgggatggtattgctagagattattggtggaaggaagaactatgatactaatgagagttcagagaaaagctattt |
113 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||| ||||||||| ||| |||||| | |||| |
|
|
| T |
33800454 |
cagagaaaagcgatgtatacagctatgggatggtgttgctagagataattgcgggaaggaagaattatgatcctaatgagacttcggagaaattcaattt |
33800355 |
T |
|
| Q |
114 |
ccctagttttgcttttaagatgatggaagaagggaaagtgagagatatacttgattccgagctgaaaat---tgatgagcatgatgatagggttcaatgt |
210 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||| ||||||| ||||||| |||||||||||||||| ||| |
|
|
| T |
33800354 |
ccctcgttttgcttttaagatgatggaagaaggtaaaatgagagatatcattgattcagagatgaaaatagatgatgagaatgatgatagggttcattgt |
33800255 |
T |
|
| Q |
211 |
gctataagggttgcattgtggtgtatacaagaagacatgtctatgagaccttcaatgaccaaagttgttcaaatgttggagggtctctgcactgt |
305 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
33800254 |
gctataaatgttgcattgtggtgtatacaggaagacatgtctatgagaccttccatgacaaaagttgttcaaatgttagagggtctttgcactgt |
33800160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 305
Target Start/End: Complemental strand, 33804918 - 33804624
Alignment:
| Q |
14 |
cagagaaaagtgatgtatacagctatgggatggtattgctagagattattggtggaaggaagaactatgatactaatgagagttcagagaaaagctattt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||| ||| ||||| || |||||| | |||| |
|
|
| T |
33804918 |
cagagaaaagtgatgtatacagctatgggatggtgttgctagagataattgggggaaggaagaattatgatcctactgagacgtcggagaaattcaattt |
33804819 |
T |
|
| Q |
114 |
ccctagttttgcttttaagatgatggaagaagggaaagtgagagatatacttgattccgagctgaaaat---tgatgagcatgatgatagggttcaatgt |
210 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||| ||||||| ||||||| ||||||||||||| || ||| |
|
|
| T |
33804818 |
ccctcgttttgcttttaagatgatggaagaaggtaaaatgagagatatcattgattcagagttgaaaatagatgatgagaatgatgatagggtacattgt |
33804719 |
T |
|
| Q |
211 |
gctataagggttgcattgtggtgtatacaagaagacatgtctatgagaccttcaatgaccaaagttgttcaaatgttggagggtctctgcactgt |
305 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
33804718 |
gctataagtgttgcattgtggtgtatacaggaagacatgtctatgagaccttccatgacaaaagttgttcaaatgttagagggtctttgcactgt |
33804624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 33813386 - 33813680
Alignment:
| Q |
14 |
cagagaaaagtgatgtatacagctatgggatggtattgctagagattattggtggaaggaagaactatgatactaatgagagttcagagaaaagctattt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||| ||| ||||| || |||||| | |||| |
|
|
| T |
33813386 |
cagagaaaagtgatgtatacagctatgggatggtgttgctagagataattgggggaaggaagaattatgatcctactgagacgtcggagaaattcaattt |
33813485 |
T |
|
| Q |
114 |
ccctagttttgcttttaagatgatggaagaagggaaagtgagagatatacttgattccgagctgaaaat---tgatgagcatgatgatagggttcaatgt |
210 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||| ||||||| ||||||| ||||||||||||| || ||| |
|
|
| T |
33813486 |
ccctcgttttgcttttaagatgatggaagaaggtaaaatgagagatatcattgattcagagttgaaaatagatgatgagaatgatgatagggtacattgt |
33813585 |
T |
|
| Q |
211 |
gctataagggttgcattgtggtgtatacaagaagacatgtctatgagaccttcaatgaccaaagttgttcaaatgttggagggtctctgcactgt |
305 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
33813586 |
gctataagtgttgcattgtggtgtatacaggaagacatgtctatgagaccttccatgacaaaagttgttcaaatgttagagggtctttgcactgt |
33813680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 31029054 - 31029348
Alignment:
| Q |
14 |
cagagaaaagtgatgtatacagctatgggatggtattgctagagattattggtggaaggaagaactatgatactaatgagagttcagagaaaagctattt |
113 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | ||||| ||||| || || ||| ||||||| |||||| ||||||||| |||||||||| |||| |
|
|
| T |
31029054 |
cagagaaaagtgatgtatacagttatgggatgatgttgcttgagataatcgggggacggaagaattatgatcctaatgagacttcagagaaatcgaattt |
31029153 |
T |
|
| Q |
114 |
ccctagttttgcttttaagatgatggaagaagggaaagtgagagatatacttgattccgagctgaaaat---tgatgagcatgatgatagggttcaatgt |
210 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||| ||||||| ||||||||||||||| ||| |
|
|
| T |
31029154 |
ccctcgttttgcttttaagatgatggaagaaggtaaagtgagagatatcattgattcggagatgaaaatagatgatgagtttgatgatagggttcactgt |
31029253 |
T |
|
| Q |
211 |
gctataagggttgcattgtggtgtatacaagaagacatgtctatgagaccttcaatgaccaaagttgttcaaatgttggagggtctctgcactgt |
305 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| || ||||| |
|
|
| T |
31029254 |
gctataagtgttgcattgtggtgtatacaggaagacatgtctatgagaccttccatgacagaagttgttcaaatgttagagggtctttgtactgt |
31029348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 6351509 - 6351453
Alignment:
| Q |
249 |
gtctatgagaccttcaatgaccaaagttgttcaaatgttggagggtctctgcactgt |
305 |
Q |
| |
|
|||| |||||||||| | ||| ||||||||||||||||| |||||| | |||||||| |
|
|
| T |
6351509 |
gtctttgagaccttccaggacaaaagttgttcaaatgttagagggtatttgcactgt |
6351453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 2528265 - 2528130
Alignment:
| Q |
14 |
cagagaaaagtgatgtatacagctatgggatggtattgctagagattattggtggaaggaagaactatgatactaatgagagttcagagaaaagctattt |
113 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||| ||| ||||||||||||| |||||||| ||||||||| |||| || | ||| |||||| |||| |
|
|
| T |
2528265 |
cagagaaaagtgatgtttatagctatggaatggtgttgttagagattattggaggaaggaaaaactatgatcctaaagaaaattcggagaaatcgcattt |
2528166 |
T |
|
| Q |
114 |
ccctagttttgcttttaagatgatggaagaagggaa |
149 |
Q |
| |
|
||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
2528165 |
tccttcttttgcttataagatgatggaacaagggaa |
2528130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 2528059 - 2527983
Alignment:
| Q |
220 |
gttgcattgtggtgtatacaagaagacatgtctatgagaccttcaatgaccaaagttgttcaaatgttggagggtct |
296 |
Q |
| |
|
|||||||| | ||||||||||||||| |||| | |||| ||||| |||| |||||||| |||||| | |||||||| |
|
|
| T |
2528059 |
gttgcatttttgtgtatacaagaagatatgtgtttgaggccttctatgaataaagttgtacaaatgcttgagggtct |
2527983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University