View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12018_high_9 (Length: 474)
Name: NF12018_high_9
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 89 - 378
Target Start/End: Complemental strand, 13577957 - 13577665
Alignment:
| Q |
89 |
atgttgcaccagtgtccaatatccaagtagagtcgaaagttgtttgtgtgcaagataatatcatgtgagagtacatgtggagatatggaa-----ccatt |
183 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13577957 |
atgttgcaccagtgcccaatatgcaagtagagataaaaattgtttgtgtgcaagataatatcatgtgagagtacatgtggagatatggaatggaaccatt |
13577858 |
T |
|
| Q |
184 |
aagtacagcattaaaaaactaggagtctaaacaacagcttcagcagaattcttttgcaaaagagcaaccaaactgatgtacatttccttagtaatcacag |
283 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13577857 |
aagtacagcattaaaa--ctataagtcaaaacaacagcttcagcggaattctttggcaaaagagcaaccaaactgatgtacatttccttagtaatcacag |
13577760 |
T |
|
| Q |
284 |
gaacctctgcttgtgcaagctgatccgtagatccattctctggctgaacagaatcatcagattcaacatgaataacagctgaattttctatggta |
378 |
Q |
| |
|
||| ||| || |||||| ||||| ||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
13577759 |
gaatctcagcatgtgcagattgatcggtagatccattctctggctgaacagtatcatcagatgcaacatgattaacagctgaattttctatggta |
13577665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 387 - 474
Target Start/End: Complemental strand, 13577613 - 13577526
Alignment:
| Q |
387 |
ttttccacagaatgtgcaaaccttacttgcataagaaccacggcctctaccataagagttcttaccatcagcagcattgatagaaatc |
474 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13577613 |
ttttccacagaatgtgcaaagcttacttgcataagtaccacggcctctaccataagctttcttaccatcagcagcattgatagaaatc |
13577526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University