View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12018_low_17 (Length: 421)
Name: NF12018_low_17
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 2 - 404
Target Start/End: Complemental strand, 3587171 - 3586769
Alignment:
| Q |
2 |
taatccagagtaaaaatccatatactcgtgcacaattcagcgagctcacgtacgaacttaattnnnnnnntgtatttaaactcttggcaaccgaatacag |
101 |
Q |
| |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||| |
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| T |
3587171 |
taatccagagtaaaaatccacatacccgtgcacaattcagcgagctcacgtacgaacttaattaaaaaaatgtatttaaacttttagcaaccgaatacag |
3587072 |
T |
|
| Q |
102 |
gttctttataaggctaaggataagactgctaacacgaattaattgaaccttatacctataacccaccgcacatcaatgaaacaataagcattccacgacc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3587071 |
gttctttataaggctaaggataagactgctaacacgaattaattgaaccttatacctataacccaccgcacatcaatgaaacaataagcattccacgacc |
3586972 |
T |
|
| Q |
202 |
attttagcccagagattgtagcgaatgacttagataaaatacaaatcataccgtaacggtttgagaacgcccaaacctgaactagttttaaagggaagtc |
301 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3586971 |
attttagcccagagattgtagcgaacgacttagataaaatacaaatcataccgtaacggtttgagaacacccaaacctgaactagttttaaagggaagtc |
3586872 |
T |
|
| Q |
302 |
aattattgaagaccatcgacaactgaagcaaacacatatacccctagtgatgagcttatcgaaagcatatatgaagagcacaacaacacaatcaagcaaa |
401 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3586871 |
aatttttgaggaccatcgacaactgaagcaaacacatatacccctagtgatgagcttatcgaaagcatatatgaagagcacaacaacacaatcaagcaaa |
3586772 |
T |
|
| Q |
402 |
atg |
404 |
Q |
| |
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||| |
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|
| T |
3586771 |
atg |
3586769 |
T |
|
Back To:
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Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 234 - 404
Target Start/End: Original strand, 9990138 - 9990308
Alignment:
| Q |
234 |
gataaaatacaaatcataccgtaacggtttgagaacgcccaaacctgaactagttttaaagggaagtcaat-tattgaagaccatcgacaactgaagcaa |
332 |
Q |
| |
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||||||| ||||| |||||| || ||||||| ||| || ||| ||| ||||||||||||||||||||| | ||| ||||| ||||| ||| |||| |
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| T |
9990138 |
gataaaacacaaaacataccagaaaggtttgataacacctaaagacgaattagttttaaagggaagtcaatgtcttgtggaccacagacaattgacgcaa |
9990237 |
T |
|
| Q |
333 |
acacatatacccctagtgatgagcttatcgaaagcatatatgaagagcacaacaacacaatcaagcaaaatg |
404 |
Q |
| |
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||||||||||||| |||| || |||||||||||||||| |||||||||||||||| ||| ||||||||||| |
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| T |
9990238 |
gcacatatacccctggtga-gaccttatcgaaagcatatctgaagagcacaacaacccaaccaagcaaaatg |
9990308 |
T |
|
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