View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12018_low_19 (Length: 398)
Name: NF12018_low_19
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 384
Target Start/End: Complemental strand, 33902947 - 33902567
Alignment:
| Q |
14 |
agagccatgacatgatgaaaaataatgttgttgttgtgaaaaagaaccataaggattttcttgaaacaaccttaatggcagaagtatttttctctgccat |
113 |
Q |
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| T |
33902947 |
agagccatgacatgatgaaaaataatgttgttgttgtgaaaaagaaccataaagattttcttgaaacaaccttaatggcagaagtatttttctctgccat |
33902848 |
T |
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| Q |
114 |
tgtaattgcatcccaattgtatcactttgttatatgaaatataataaaaacaatcaagatcgttgttatctcatccgcttttgatcacgttctagatgtt |
213 |
Q |
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| T |
33902847 |
tgtaattgcatcccaattgtatcactttgttatatgaaatataataaaaacaatcaagatcgttgttatctgatccacttttgatcacgttccagatgtt |
33902748 |
T |
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| Q |
214 |
cagtccttagcgtcattcnnnnnnngataatagatgtcccgtcatgaatgtgagaaatgtggaccatggtgtacattgaaaagttaga-----------g |
302 |
Q |
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| T |
33902747 |
cagtccttagcgtcattc-aaaaaagataatagatgtcccgtcatgaacgtgagaaatgtggaccatggtgtgcattgaaaagttagagaaaaagaattg |
33902649 |
T |
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| Q |
303 |
aaaaagaaaatggataatgaagaattg-aatgtgtgagactgtgtgggaattggagaggaagaagaagaaagcgtgagaatag |
384 |
Q |
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| T |
33902648 |
aaaaagaaaatggataatgaagaattgaaatgtgtgagacagtgt-ggaattggagaggaagaagaagaaagcgtgagaatag |
33902567 |
T |
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