View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12018_low_20 (Length: 394)
Name: NF12018_low_20
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 32708785 - 32708409
Alignment:
| Q |
1 |
tgatactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32708785 |
tgatactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttct |
32708686 |
T |
|
| Q |
101 |
gaagtgaattggaatgctcttgatcaatggaatgctcttgcttgtgagtctcaaatgtctgaatcactcggcgatggtgcatacaatgtgatgcagtgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
32708685 |
gaagtgaattggaatgctcttgatcaatggaatgctcttgcttgtgagtctcaaatgtctgaatcacttggcgatggtgcatacaatgtcatgcagtgca |
32708586 |
T |
|
| Q |
201 |
tgagagccgtttctgaacctttgctagttagccactttggagagtctattattgatgagctctttgatcgctatcaagaaatcttagttgatcggatgtc |
300 |
Q |
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| T |
32708585 |
tgagagccgtttctgaacctttgctagttagacactttggagagtctattattgatgagctctttgatcgctatcaagaaatcttagttgatcggatgtc |
32708486 |
T |
|
| Q |
301 |
caaggaaaaaactaaatttgtcaatgtcaccgtagtattgactagaaatccataaaaatttatttagggtttacaaa |
377 |
Q |
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| T |
32708485 |
caaggaaaaaactaaatttgtcaatgtcaccgtagtattgactagaaatccataaaaaattatttagggtttacaaa |
32708409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 32627104 - 32627031
Alignment:
| Q |
3 |
atactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcattt |
76 |
Q |
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| T |
32627104 |
atactttcaacattcctatatattatccatctccatctgaagtgaaattggaagttattactgaaggatcattt |
32627031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 27736133 - 27735896
Alignment:
| Q |
3 |
atactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctga |
102 |
Q |
| |
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||||||||||||||||| | || |||||||||||| |||||||| |||||||||||||| |||||||||||| |||| || ||||| |||||||| |
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| T |
27736133 |
atactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaaggatcatttgtcatcaataaattggaggtttctga |
27736034 |
T |
|
| Q |
103 |
agtgaattggaatgctcttgatcaatggaatgctcttgcttgtgagtctcaaatgtctgaatcactcggcgatggtgcatacaatgtgatgcagtgcatg |
202 |
Q |
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||| |||||||||||||||||| | || ||||| ||| | ||| ||| ||||||| ||||||||| | |||| || ||||||| || || ||||| |
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| T |
27736033 |
agttaattggaatgctcttgatgattgtaatgcctttgactttgaatctgaaatgtcagaatcactcagagatgatggatacaatatggcacaatgcatt |
27735934 |
T |
|
| Q |
203 |
agagccgtttctgaacctttgctagttagccactttgg |
240 |
Q |
| |
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|| || || ||||||||||||||||||| |||||||| |
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| T |
27735933 |
agggctgtggctgaacctttgctagttagtcactttgg |
27735896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 5810796 - 5810680
Alignment:
| Q |
7 |
tttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctgaagtg |
106 |
Q |
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||||||||||||| | || |||||||||||| || || | ||||||||||||| ||||||||||| ||||| |||||| | ||||||||||| |
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| T |
5810796 |
tttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcaccgaaggatcattctccatcagtcgattagaggtttctgaagta |
5810697 |
T |
|
| Q |
107 |
aattggaatgctcttga |
123 |
Q |
| |
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||||||||||||||||| |
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| T |
5810696 |
aattggaatgctcttga |
5810680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 20117936 - 20118000
Alignment:
| Q |
28 |
tccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgg |
92 |
Q |
| |
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|||||||||| | |||||||||||||||||||| | ||||| |||||| |||||||| ||||| |
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| T |
20117936 |
tccatctccaactgaagtgaaattggaagttctaactgaagggtcatttgtcatcgatcaattgg |
20118000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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