View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12018_low_23 (Length: 382)
Name: NF12018_low_23
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 8e-43; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 98 - 242
Target Start/End: Complemental strand, 785416 - 785272
Alignment:
| Q |
98 |
aaatttaaaaatatcaaatcaatcatgatgctaatgaattatggtcacctaaaaaaggattttctacaaacacaatttagtagcttcatacctatgctcc |
197 |
Q |
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| T |
785416 |
aaatttaaaaatatcaaatccatcatgatcctaacgagctatggtcacttaaaaagggattttccacaaaagaaatttagtagtttcatacctatgctcc |
785317 |
T |
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| Q |
198 |
aataacattcatcaggcttgatagatttatatagctccctctgag |
242 |
Q |
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| T |
785316 |
aataacaatcatcaggcttgatagatttatatagctccccctgag |
785272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 770695 - 770783
Alignment:
| Q |
154 |
ggattttctacaaacacaatttagtagcttcatacctatgctccaataacattcatcaggcttgatagatttatatagctccctctgag |
242 |
Q |
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| T |
770695 |
ggattttctacaaacacaatttagtagtttcatacctatgctccaataacattcatcaggcttgatagatttatatagctccctctgag |
770783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 780801 - 780584
Alignment:
| Q |
18 |
atttgatcatgcttggttaaaagaatagaaactgtattctgatcctctgcaaagataggttac-ccagaatgttc---acacaaaaatttaaaaatatca |
113 |
Q |
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| T |
780801 |
atttgatcatgtttggttaaaagaatagaaactgtactttgatcctctgcaaacatagttttcaaaataattagcaaaacaccaaaatttaaaagtatca |
780702 |
T |
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| Q |
114 |
aatcaatcatgatgctaatgaattatggtcacctaaaaaaggattttctacaaacacaatttag---tagcttcatacctatgctccaataacattcatc |
210 |
Q |
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| T |
780701 |
aatccatcatg--------gaattatggtcacataaaaaaggattttccacaaatgcaatttagtaatagtcaaatacctatgctccaataacattcatc |
780610 |
T |
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| Q |
211 |
aggcttgatagatttatatagctccc |
236 |
Q |
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| T |
780609 |
agccttgataaatttatacagctccc |
780584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 770565 - 770615
Alignment:
| Q |
18 |
atttgatcatgcttggttaaaagaatagaaactgtattctgatcctctgca |
68 |
Q |
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| T |
770565 |
atttgatcatgcttggttaaaagaatagaaactgtattctgatcctctgca |
770615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 780424 - 780379
Alignment:
| Q |
327 |
tataactgagtaaaagcttacatcaataattggtggctgccctttg |
372 |
Q |
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| T |
780424 |
tataactgagtaaaagcttacatcaataattggtggctgccctttg |
780379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 770921 - 770966
Alignment:
| Q |
327 |
tataactgagtaaaagcttacatcaataattggtggctgccctttg |
372 |
Q |
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| T |
770921 |
tataactgagtaaatgcttacatcaataattggtggctgccctttg |
770966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 785549 - 785501
Alignment:
| Q |
18 |
atttgatcatgcttggttaaaagaatagaaactgtattctgatcctctg |
66 |
Q |
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| T |
785549 |
atttgatcatgtttggttaaaagaatagaaagtgtattctgatcctctg |
785501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 785110 - 785074
Alignment:
| Q |
336 |
gtaaaagcttacatcaataattggtggctgccctttg |
372 |
Q |
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| T |
785110 |
gtaaaagcttacatcaataattggtggctgccctttg |
785074 |
T |
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