View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12018_low_31 (Length: 313)
Name: NF12018_low_31
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_low_31 |
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| [»] scaffold0311 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 158 - 292
Target Start/End: Original strand, 25635156 - 25635290
Alignment:
| Q |
158 |
tcttggctccctctagcaataatctaattaacaatggacaatggtaattttgatgtactacataatctcccatactactcacttctcttttgttcctcca |
257 |
Q |
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| T |
25635156 |
tcttggctccctctagcaataatctaattaacaatggacaatggtaattttgatgtactacataatctcccatactactcacttctcttttgttcctcca |
25635255 |
T |
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| Q |
258 |
gaataccgagaattcaattcctatctgcaaaacca |
292 |
Q |
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| T |
25635256 |
gaataccaagaattcaattcctatctgcaaaacca |
25635290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 25634993 - 25635110
Alignment:
| Q |
26 |
ctataaatgcgtaaagaagagctattacaacagctactacaacgatttgtttcgtaatttaacataattctggtaccattttaaagcacgattgagttca |
125 |
Q |
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| T |
25634993 |
ctataaatgcgtaaagaagagccattacaacagctactacaacgatttgtttcgtaatttaacataattctggtaccattttaaagcacgattgagttca |
25635092 |
T |
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| Q |
126 |
atggcaaacttcttttat |
143 |
Q |
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| T |
25635093 |
atggcaaacttcttttat |
25635110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 305
Target Start/End: Original strand, 25635291 - 25635330
Alignment:
| Q |
266 |
agaattcaattcctatctgcaaaaccagatgttctctgct |
305 |
Q |
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| T |
25635291 |
agaattcaattcctatctgcaaaaccagatgttcactgct |
25635330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0311
Description:
Target: scaffold0311; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 174 - 290
Target Start/End: Complemental strand, 3569 - 3453
Alignment:
| Q |
174 |
caataatctaattaacaatggacaatggtaattttgatgtactacataatctcccatactactcacttctcttttgttcctccagaataccgagaattca |
273 |
Q |
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| T |
3569 |
caataatctaactaacaatggacaatggtatttttgatgtacttcataatttctcatattaatcgtttctcttttgttcctccataataccaagaattca |
3470 |
T |
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| Q |
274 |
attcctatctgcaaaac |
290 |
Q |
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| T |
3469 |
attcctatctgcaaaac |
3453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 3696 - 3648
Alignment:
| Q |
2 |
agagtaaaaataacacagtagcttctataaatgcgtaaagaagagctat |
50 |
Q |
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| T |
3696 |
agagtaaaaataacacagtaacttctataaatgtgtaaagaagagctat |
3648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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