View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12018_low_32 (Length: 305)
Name: NF12018_low_32
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 2563981 - 2563688
Alignment:
| Q |
1 |
ttgctttctccactggccttgtataaccaagcagcagcccataatagttcatccttttggtacacaac----------catatataaatgaatgatacta |
90 |
Q |
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| T |
2563981 |
ttgctttctccactggccttgtataaccaagcagcagcccataatagttcatccttttcatacacaattcaaaaatcacaaccataaatgaatgatacta |
2563882 |
T |
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| Q |
91 |
agaagttataattagtttgtaaatattctcttttccacaagctgtaatttcttacttggtaaccagagtacgagcagtagaatggacaagaatctgtgta |
190 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2563881 |
agaagttataactagtttgtaaatattctcttttccacaagctgtaatttcttacttggtaaccagagtacgagcagtagaatggacaagaacctgtgta |
2563782 |
T |
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| Q |
191 |
ggtgcctctatacttgtcagcaaaatcaaacaactacaaaacatatgttattactgactgttattagatgtttgtttaactaattgatcaatta |
284 |
Q |
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| T |
2563781 |
ggtgcctctatacttgtcagcaaaatcaaacaactacaaaacatatgttattactgactgttattagatgtttgtttaactaattgatcaatta |
2563688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 2573687 - 2573586
Alignment:
| Q |
134 |
gtaatttcttacttggtaaccagagtacgagcagtagaatggacaagaatctgtgtaggtgcctctatacttgtcagcaaaatcaaacaactacaaaaca |
233 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||||| | | ||| ||||||||||||| ||||||||||||||||||| | ||||| |
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| T |
2573687 |
gtaatttcttacttggtaaccagagtatgagcagtagaatgggcaagaacccgagtaactgcctctatacttatcagcaaaatcaaacaactgcgaaaca |
2573588 |
T |
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| Q |
234 |
ta |
235 |
Q |
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|| |
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| T |
2573587 |
ta |
2573586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 2573831 - 2573765
Alignment:
| Q |
1 |
ttgctttctccactggccttgtataaccaagcagcagcccataatagttcatccttttggtacacaa |
67 |
Q |
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|||||||| ||||| |||||||||| ||||| |||||||||||||| ||||||||||| ||||||| |
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| T |
2573831 |
ttgctttccccactagccttgtatagccaagtagcagcccataataattcatccttttcatacacaa |
2573765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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