View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12018_low_34 (Length: 298)
Name: NF12018_low_34
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 39280554 - 39280280
Alignment:
| Q |
19 |
atcccacagtattcagactgagacccttggctgacatgctattcacaacttcagaagcttcctcgaagtgactctgcttacagaaaccatctatcaatat |
118 |
Q |
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| T |
39280554 |
atcccacagtattcagactgagacccttggctgacatgctattcacaactttagaagcttcctcgaagtgaccctgcttacagaaaccatctatcaatat |
39280455 |
T |
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| Q |
119 |
agtgtatgtgatcacattggcctcaaaacctttcttgaccatctcatctaagaattcaagagaagagaccagatgcccctttttgcaaagcccgtcgatc |
218 |
Q |
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| T |
39280454 |
agtgtatgtgatcacattgggctcaaaacctttcttgaccatctcatctaagaattcaagagcagagaccagatacccctttttgcaaagcccatcgatc |
39280355 |
T |
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| Q |
219 |
attatgttaaacgtgaaggcatcaggctcaaaaccggcaattaccatgtttttgtacaaaagatcctttgcttct |
293 |
Q |
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| T |
39280354 |
attatgttaaacgtgaaggcatcaggctcaaaaccggcaattaccatgtttttgtacaaaagatccttggcttct |
39280280 |
T |
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Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 96 - 293
Target Start/End: Original strand, 17349847 - 17350044
Alignment:
| Q |
96 |
ttacagaaaccatctatcaatatagtgtatgtgatcacattggcctcaaaacctttcttgaccatctcatctaagaattcaagagaagagaccagatgcc |
195 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||||||||| |||||||||||||| |||||||| || || |
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| T |
17349847 |
ttacagaaaccatttatcaatatagtgtatgtgatcacatttggctcaaaacctttctctaccatctcatttaagaattcaagagcagagaccaaatacc |
17349946 |
T |
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| Q |
196 |
cctttttgcaaagcccgtcgatcattatgttaaacgtgaaggcatcaggctcaaaaccggcaattaccatgtttttgtacaaaagatcctttgcttct |
293 |
Q |
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| T |
17349947 |
ccttcttgcaaagtccatcgatcattatgttaaacatgaaggcatcaggctcaaagccggcaattaccatgttttggtacagaagatccttggcttct |
17350044 |
T |
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