View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12018_low_4 (Length: 569)
Name: NF12018_low_4
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 159 - 518
Target Start/End: Original strand, 4341261 - 4341620
Alignment:
| Q |
159 |
aaaagttggctatcgagggaaaagaatcaaaccacttaaatatcccaccgagcatcttattctacgtgggacttaaggaccctatagtagggccacccct |
258 |
Q |
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| T |
4341261 |
aaaagttggctatcgagggaaaagaatcaaaccacttaaatatcccaccgagcatcttattctacgtgggacttaaggaccctatagtagggccacccct |
4341360 |
T |
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| Q |
259 |
tagaccgacgtctctacaaccccgttgtatgatgttttactcgaccttttcggtcaggctgtagtgtaggtagttctttctaagccaccgacaaataact |
358 |
Q |
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| T |
4341361 |
tagaccgacgtctctacaaccccgttgcatgatgttttactcgaccttttcggtcaagctgtagtgtaggtagttctttctaagccaccgacaaataact |
4341460 |
T |
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| Q |
359 |
ctaacaccaattgacaaatatttaacaacttgttgaattctcattaaaaagttagatatcctctaacatccaaatctctattatatatctattattttaa |
458 |
Q |
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| T |
4341461 |
ctaacaccaattgacaaatatttaacaacttgttgaattctcattaaaaagttaggtatcctctaacatccaaatctctattatatatctattattttaa |
4341560 |
T |
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| Q |
459 |
attattatcggtgttaacgtgtgtcagggtccatgtatgcgtcactctttcatattacat |
518 |
Q |
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| T |
4341561 |
attattaccggtgttaacgtgtgtcagggtccgtgtatgcgtcactctttcatattacat |
4341620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 4341178 - 4341262
Alignment:
| Q |
13 |
cattatacactatgtgaaactagcaacttagattgaaggcgaatttggtgtatgatacgtgtaatatcacacaacatgacaccaa |
97 |
Q |
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| T |
4341178 |
cattatacactatgtgaaactagcaacttagattgaaggcgaatttggtgtctgatacgtgttatatcacacaacatgacaccaa |
4341262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 519 - 569
Target Start/End: Original strand, 4347140 - 4347190
Alignment:
| Q |
519 |
gctttgtcaaatggtttttcacgatgagaaagagtaagtttattccacttc |
569 |
Q |
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| T |
4347140 |
gctttgtcaaatggcttttcacgatgagaaagagtaagtttatttcacttc |
4347190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 8424788 - 8424746
Alignment:
| Q |
172 |
cgagggaaaagaatcaaaccacttaaatatcccaccgagcatc |
214 |
Q |
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| T |
8424788 |
cgagggaaaagaatcaaaccacttaaatactccaccgaacatc |
8424746 |
T |
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