View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12018_low_5 (Length: 553)
Name: NF12018_low_5
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 17 - 548
Target Start/End: Original strand, 42178542 - 42179078
Alignment:
| Q |
17 |
acagaatattcaataattgaaggggaataagatatgcatgcatctaccttattgtaaacttcatcccttaaacaaacaagccagagaacactgcttattt |
116 |
Q |
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| T |
42178542 |
acagaatattcaataattgaagaggaataagatatgcatgcatctaccttattgtaaacttcatcccttaaacaaacaagccagagaacactgcttattt |
42178641 |
T |
|
| Q |
117 |
cgacccacgtgcacnnnnnnn--tgtgaaagtatagtgataagggcacgaaggaccaaaa-tagagtatagtttgaggcaagcccccaatagttgaggga |
213 |
Q |
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| T |
42178642 |
cgacccacgtgcacaaaaaaaaatgtgaaagtatagtgataagggcacgaaggaccaaaaatagagtatagtttgaggcaagcccccaatagttgaggga |
42178741 |
T |
|
| Q |
214 |
cacacaaaaa-gacagaaacagacttgtccatccttcttattttttccattaaaatccttgcttcattggaaacatggtgcaatggtacaaatcttaaag |
312 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42178742 |
cacacaaaaaagacagaaacagacttgtccatccttcttattttttccattaaaatccttgcttcattggaaacatggtgcaatggtacaaatcttaaag |
42178841 |
T |
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| Q |
313 |
ctacttaaa-ctttgtgacttattagttcttgttctactaaagtgaagcatccactaagatatgtctatcatgttcagtacattttggctttgtgctctt |
411 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
42178842 |
ctacttaaaactttgtgatttattagttcttgttctactaaagtgaagcatccactaaaatatgtctatcatgttcagtacgttttggctttgtgctctt |
42178941 |
T |
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| Q |
412 |
gtaattttagtgtataatggcctatatgagtgtattaattcttccaagttgttagagattcacacaaaatgccactctcttaatgctagaggccaaaatt |
511 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42178942 |
gtaagtttagtgcataatggcctatatgagtgtattaattcttccaagttgttagagattcacacaaaatgccactctcttaatgctagaggccaaaatt |
42179041 |
T |
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| Q |
512 |
ggtgtattctccaccttgttttgcatcctatgcttct |
548 |
Q |
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| T |
42179042 |
ggtgtattctccaccttgttttgcatcctattcttct |
42179078 |
T |
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