View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12018_low_6 (Length: 544)
Name: NF12018_low_6
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 19 - 528
Target Start/End: Complemental strand, 40284960 - 40284452
Alignment:
| Q |
19 |
gtgtgatcgtgcacccggtgaatggatgaatcctgtgataccgaactgcgagacttgtggaaaagagaaagcaatgcatccattgatgacaaagaagaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40284960 |
gtgtgatcgtgcacccggtgaatggatgaatcctgtgataccgaactgcgagacttgtggaaaagagaaagcaatgcatccattgatgacaaagaagaga |
40284861 |
T |
|
| Q |
119 |
aacatcaattggttgttcttgctgttaggtcaaatgatagggcgttgcaagctcgatcaattgaagtatttctgcaaacatgctgatatacacagaacag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40284860 |
aacatcaattggttgttcttgctgttaggtcaaatgatagggtgttgcaagctcgatcaattgaagtatttctgcaaacatgctgatatacacagaacag |
40284761 |
T |
|
| Q |
219 |
gtgccaaaaatagattgatttattcaacttattttggtttatgcaaacaactccaaccaaacaaaaccttccttccatagagtactacaaattcattata |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40284760 |
gtgccaaaaatagattgatttattcaacttattttggtttatgcaaacaactccaaccaaacaaatccttccttccatagagtactacaaattcattata |
40284661 |
T |
|
| Q |
319 |
ttttctgtgcatcccttttgtttttagaatttgtttgtttggtttgatcttgaattcttgatctggatcagtatctctggacacttgatatttgttaggt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40284660 |
ttttctgtgcatcccttttgtttttagaatttgtttgtttggtttgatc-tgaattcttgatctggatcagtatctctggacacttgatatgtgttaggt |
40284562 |
T |
|
| Q |
419 |
tttacttttctttttgataaattctttcatgcgtgctcgtgtccatttttattttaatgaacattgttactttgattaatatagtacatctctcagtctt |
518 |
Q |
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| T |
40284561 |
tttacttttctttttgatcaattctttcatgcgtgctcgtgtccatttttattttaatgaacattgttactttgattaatatagtacatctctcagtctt |
40284462 |
T |
|
| Q |
519 |
ggtagttgat |
528 |
Q |
| |
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||||||||| |
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| T |
40284461 |
agtagttgat |
40284452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 40279999 - 40279707
Alignment:
| Q |
19 |
gtgtgatcgtgcacccggtgaatggatgaatcctgtgataccgaactgcgagacttgtggaaaagagaaagcaatgcatccattgatgacaaagaagaga |
118 |
Q |
| |
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||||||||||||||||| ||||||||||||||| |||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40279999 |
gtgtgatcgtgcacccgttgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcatccattgatgacaaagaagaga |
40279900 |
T |
|
| Q |
119 |
aacatcaattggttgttcttgctgttaggtcaaatgatagggcgttgcaagctcgatcaattgaagtatttctgcaaacatgctgatatacacagaacag |
218 |
Q |
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|| || |||||||||||||||||||| |||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40279899 |
aatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagtatttctgcaaacatgctgatatacacagaacag |
40279800 |
T |
|
| Q |
219 |
gtgccaaaaatagattgatttattcaacttattttggtttatgcaaacaactccaaccaaacaaaaccttccttccatagagtactacaaatt |
311 |
Q |
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| T |
40279799 |
gtgccaaaaatagattgatttattcaacttattttggtttatgcaaacagctccaaccaaacacgcccttccttccatagagtactacaaatt |
40279707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 40458351 - 40458643
Alignment:
| Q |
19 |
gtgtgatcgtgcacccggtgaatggatgaatcctgtgataccgaactgcgagacttgtggaaaagagaaagcaatgcatccattgatgacaaagaagaga |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40458351 |
gtgtgatcgtgcacccgttgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcatccattgatgacaaagaagaga |
40458450 |
T |
|
| Q |
119 |
aacatcaattggttgttcttgctgttaggtcaaatgatagggcgttgcaagctcgatcaattgaagtatttctgcaaacatgctgatatacacagaacag |
218 |
Q |
| |
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|| || |||||||||||||||||||| |||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458451 |
aatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagtatttctgcaaacatgctgatatacacagaacag |
40458550 |
T |
|
| Q |
219 |
gtgccaaaaatagattgatttattcaacttattttggtttatgcaaacaactccaaccaaacaaaaccttccttccatagagtactacaaatt |
311 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40458551 |
gtgccaaaaatagattgatttattcaacttattttggtttatgcaaacagctccaaccaaacacgcccttccttccatagagtactacaaatt |
40458643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 195
Target Start/End: Original strand, 39781352 - 39781506
Alignment:
| Q |
41 |
tggatgaatcctgtgataccgaactgcgagacttgtggaaaagagaaagcaatgcatccattgatgacaaagaagagaaacatcaattggttgttcttgc |
140 |
Q |
| |
|
||||||||||||||| | || || ||||| | |||||| |||| || || ||| ||||| | || ||||||||||||| ||| ||||||||||||||| |
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| T |
39781352 |
tggatgaatcctgtgcttcccaaatgcgacaagtgtggacaagaaaatgctatgaatccaataatcacaaagaagagaaccattaattggttgttcttgt |
39781451 |
T |
|
| Q |
141 |
tgttaggtcaaatgatagggcgttgcaagctcgatcaattgaagtatttctgcaa |
195 |
Q |
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| || ||||| ||||| ||| |||||||||| | || ||||||||||||||||| |
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| T |
39781452 |
tattgggtcagatgattgggtgttgcaagcttcaacatttgaagtatttctgcaa |
39781506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 241
Target Start/End: Complemental strand, 39600621 - 39600421
Alignment:
| Q |
41 |
tggatgaatcctgtgataccgaactgcgagacttgtggaaaagagaaagcaatgcatccattgatgacaaagaagagaaacatcaattggttgttcttgc |
140 |
Q |
| |
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|||||||||||| || | || || ||||| | |||||| |||| || || ||| ||||| | || ||||||||||||| |||||||||||||| ||| |
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| T |
39600621 |
tggatgaatcctatgcttccaaagtgcgaaaagtgtggacaagaaaacgctatgaatccaataatcacaaagaagagaacaatcaattggttgtttttgt |
39600522 |
T |
|
| Q |
141 |
tgttaggtcaaatgatagggcgttgcaagctcgatcaattgaagtatttctgcaaacatgctgatatacacagaacaggtgccaaaaatagattgattta |
240 |
Q |
| |
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|||| ||||| ||||| ||| |||||||||| | || ||||| ||||||||||||||| |||| || || || |||||||||||| | |||||||| |
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| T |
39600521 |
tgttgggtcagatgattgggtgttgcaagcttcaacatttgaaatatttctgcaaacatagcaatattcataggactggtgccaaaaatcgtttgattta |
39600422 |
T |
|
| Q |
241 |
t |
241 |
Q |
| |
|
| |
|
|
| T |
39600421 |
t |
39600421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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