View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12018_low_7 (Length: 516)
Name: NF12018_low_7
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 124 - 461
Target Start/End: Complemental strand, 41772682 - 41772326
Alignment:
| Q |
124 |
ttcatttgattccaacaatttcaataactcaaattgcctatatggttggtggttgcaatcaaactttttctaactagtcat---caccatcatgaccttt |
220 |
Q |
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| T |
41772682 |
ttcatttgattccaa---tttcaataactcaaattgcctatatggttggtggttgcaatcaaactttttctaactagtcatattcaccatcatgaccttt |
41772586 |
T |
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| Q |
221 |
ctctagtatgtcccacgcttccttggacgaggtttcattctcaattttctgtaaattggtcgtaactcgatgctggaagaacaaagctttaaagtcttc- |
319 |
Q |
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| T |
41772585 |
ctctagtatgtcccacgcttccttggacgaggtttcattctcaattttctggaaattggtcgtaactcgatgctggaagaacaaagctttaaagtcttcc |
41772486 |
T |
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| Q |
320 |
---cttctttgaatctttgtagattgcacacggagcataagttgcatcattat----ctaattgttatgaaccacctccatgacatcttaggaagctaaa |
412 |
Q |
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| T |
41772485 |
ttccttctttgaatctttgtagattgcacacggagcataagttgcatcattatctaactaattgttatgaaccacctccatgacatctt-ggaagctaaa |
41772387 |
T |
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| Q |
413 |
attcac-------------ctccattgatccccaattcttactatctagcatgagtagtttc |
461 |
Q |
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| T |
41772386 |
attcaccttcatttgtttactccattgat-cccaattcttactatctagcatgagtagtttc |
41772326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 41772731 - 41772680
Alignment:
| Q |
49 |
tagacacattttcatcacaacttttcatctggattgccaccgggtctaattc |
100 |
Q |
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| T |
41772731 |
tagacacattttcatcacaacttttcatctggattgccaccgggtctaattc |
41772680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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