View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12018_low_8 (Length: 513)
Name: NF12018_low_8
Description: NF12018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12018_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 1711656 - 1711291
Alignment:
| Q |
18 |
catacatgagttagtaaaatcaaatataaacttgagttggtaaatggaaatttattaattaagaatatgtagtggagaaatatatcatatattaattcaa |
117 |
Q |
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| T |
1711656 |
catacatgagttagtaaaatcaaatataaacttgagttggtaaatggaaatttattaattaagaatatgtagtggagaaatatatcatatattaattcaa |
1711557 |
T |
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| Q |
118 |
ttatnnnnnnngtctccgaaacagataacataattaattgtctcactctgatgttcaggtcatttcatcgcatattttt-gtgaagacaatgggtgcgca |
216 |
Q |
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| T |
1711556 |
ttattaaaaaagtctccaaaacggataacataattaattgtctcactctgatgttcaggtcatttcatcgcatattttttgtgaagacaataggtgcgca |
1711457 |
T |
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| Q |
217 |
gacaagcttgctaactatgatcactctattcagggttcttggtggtccactaacttacccaattttctcagggatgccttttttagggaccattttgaat |
316 |
Q |
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| T |
1711456 |
gacaagcttgctaactatggtcactctattcaaggttcttggtggtcaactaacttacccaattttcttagggatgccttttttagggaccattttggat |
1711357 |
T |
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| Q |
317 |
tgcagacgtatcgtcttccttagattttcttgttatgttttcttttcttttgctttgagggtcagacctagtctccccc |
395 |
Q |
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| T |
1711356 |
tgcagacgtatcgtcttccttag-------------gttttcttttcttttgctttgagggtcagacctagtctccccc |
1711291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 442 - 501
Target Start/End: Complemental strand, 1711244 - 1711185
Alignment:
| Q |
442 |
gaggttggcggcagaggataaaagttcctcaaagataccaacctagttgggatgtctgtg |
501 |
Q |
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| T |
1711244 |
gaggttggcggcagaggataaaagttcctcaaagatgccaacctagttaggatgtctgtg |
1711185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 347
Target Start/End: Complemental strand, 19425070 - 19424960
Alignment:
| Q |
237 |
tcactctattcagggttcttggtggtccactaacttacccaattttctcagggatgccttttttagggaccattttgaattgcagacgtatcgtcttcct |
336 |
Q |
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| T |
19425070 |
tcactctgttcaggattcttggtggtcaactagcttacctgatttccttagggaggacttttttagggaccgttttggattgcccatgtatcgttttcct |
19424971 |
T |
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| Q |
337 |
tagattttctt |
347 |
Q |
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||| ||||||| |
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| T |
19424970 |
tagcttttctt |
19424960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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