View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12019_high_14 (Length: 373)
Name: NF12019_high_14
Description: NF12019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12019_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 287
Target Start/End: Original strand, 6283607 - 6283875
Alignment:
| Q |
15 |
atgaatgaaataaattctcattatttgatccaagagtacaatacaccttatatatagttcatagaggtgtaggatagttatagtacaagtgttgtatatg |
114 |
Q |
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| T |
6283607 |
atgaatgaaataaattctcattatttgatccaagagaacaatacaccttatatatagttcatagaggtgtaggatagttatagtacaagtgttgtatatg |
6283706 |
T |
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| Q |
115 |
ctatacaaatcctaagacaattagttataactaactggctagataacttgctacacaagttatctctatatatagaagaggttaagaagcttcaatgtct |
214 |
Q |
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| T |
6283707 |
ctatacaaattcttagacaattagttataactaactggctagataacttgctacacaagttatctc----tatagaagaggttaagaagcttcaatgtct |
6283802 |
T |
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| Q |
215 |
tcgtgagccaatagttcgaacttatcttgtaaaaaggatgggtggatcaaacttgactagaggtttttattgt |
287 |
Q |
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| T |
6283803 |
tcatgagccaatagtttgaacttatcttgtaaaaaggatgggtggatcaaacttgactagagatttttattgt |
6283875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 13757425 - 13757332
Alignment:
| Q |
15 |
atgaatgaaataaattctcattatttgatccaagagtacaatacaccttatatatagttcatagaggtgtaggatagttatagtacaagtgttg |
108 |
Q |
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| T |
13757425 |
atgaatgaaatgaatttgcattacttgatcaaagagtagaatacacattatatagagttcatagaggtgtaggatagttattgtacaagtgttg |
13757332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 6283887 - 6283948
Alignment:
| Q |
271 |
ctagaggtttttattgtcttgatcttagaagtcaaaacattatttataagaagtaaagtaat |
332 |
Q |
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| T |
6283887 |
ctagaggtttttattgtcttgatcttagaagtccaaacattatttttaagtagtatagtaat |
6283948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 38644477 - 38644542
Alignment:
| Q |
46 |
aagagtacaatacaccttatatatagttcatagaggtgtaggatagttatagtacaagtgttgtat |
111 |
Q |
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| T |
38644477 |
aagagtacaatacaccttatatagagttcatggaggtgtaggatagttatggtacaaatgatgtat |
38644542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 149
Target Start/End: Original strand, 39845124 - 39845243
Alignment:
| Q |
28 |
attctcattatttgatccaagagtacaatacaccttatatatagttcatagaggtgtaggatagttatagtacaagtgttgtatatgctatacaaatcct |
127 |
Q |
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||||||||||||||||| |||||||| |||| ||| |||||| ||||| ||||||||||||||||| |||| |||| ||||| |||||| || || |
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| T |
39845124 |
attctcattatttgatcatagagtacattacagcttgtatataattcatgaaggtgtaggatagttatgataca--tgttctatattctatactaactct |
39845221 |
T |
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| Q |
128 |
aagacaattagttataactaac |
149 |
Q |
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|| ||| ||||||| ||||||| |
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| T |
39845222 |
aaaacagttagttacaactaac |
39845243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 1143963 - 1143905
Alignment:
| Q |
123 |
atcctaagacaattagttataactaactggctagataacttgctacacaagttatctct |
181 |
Q |
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||||||| ||| |||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
1143963 |
atcctaatacagttagttataactaactagctagataacttgtggaacaagttatctct |
1143905 |
T |
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