View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12019_high_16 (Length: 335)
Name: NF12019_high_16
Description: NF12019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12019_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 27 - 318
Target Start/End: Complemental strand, 14301899 - 14301607
Alignment:
| Q |
27 |
ctgttttaatcttcttgtgaatcactctccctgtcttgaacaattaccaaacaggtgttgaagaattgattaaggtctaagaatcaaaaatttatcattg |
126 |
Q |
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| T |
14301899 |
ctgttttaatcttcttgtgaatcgctctcactgtcttgaagaattaccaaacaggtgttgaagaatcgattaaggtctatgaatcaaaaatttatcattg |
14301800 |
T |
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| Q |
127 |
gattttgtctcaaggacaagattgtgtgtgagaatgtgtagatgttcttacttttatttttaat-aatccaaaacatcgattaaaaccgatagttaattt |
225 |
Q |
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| T |
14301799 |
gattttgtctcaaggacaagattgtgtgtgagaatgtgtagatgttcttacttttattcttaatgaatccaaaacatcgattaaaaccgatagttaattt |
14301700 |
T |
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| Q |
226 |
tccccgcataatatttact-nnnnnnngtgctctttaactaatttgagcttttagagagaattcattttattcttctccatcgttcattttcag |
318 |
Q |
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| T |
14301699 |
tccctgcataatatttactaaaaaaaagtactctttaactaa-ttcacgttttcgagagaattctttttattcttctccatggttctttttcag |
14301607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 32 - 171
Target Start/End: Complemental strand, 14319685 - 14319546
Alignment:
| Q |
32 |
ttaatcttcttgtgaatcactctccctgtcttgaacaattaccaaacaggtgttgaagaattgattaaggtctaagaatcaaaaatttatcattggattt |
131 |
Q |
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| T |
14319685 |
ttaatcttcttgtgaatcgctctcactgtcttgaagaatcaccaaacacgtgttgaagaatcaattaaggtctatgaataaaaaatttattattggattt |
14319586 |
T |
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| Q |
132 |
tgtctcaaggacaagattgtgtgtgagaatgtgtagatgt |
171 |
Q |
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| T |
14319585 |
tgtctcaaggacaagattgtgtgtgagaatgtgtaaatgt |
14319546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 16731770 - 16731640
Alignment:
| Q |
22 |
tgaatctgttttaatcttcttgtgaatcactctccctgtcttgaacaattaccaaacaggtgttgaagaattgattaaggtctaagaatcaaaaatttat |
121 |
Q |
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| T |
16731770 |
tgaatctgatttaatcttctcgtgaattgctctctctatcatgaaaaattatcgaacaagtaatgaagaattgattagggtctgtgaatcaaaaacatct |
16731671 |
T |
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| Q |
122 |
cattggattttgtctcaaggacaagattgtg |
152 |
Q |
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| T |
16731670 |
cagaggattttgtctcaaggactaaattgtg |
16731640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 16731632 - 16731559
Alignment:
| Q |
138 |
aaggacaagattgtgtgtgagaatgtgtagatgttcttacttttatttttaat-aatccaaaacatcgattaaa |
210 |
Q |
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| T |
16731632 |
aaggactagattgtgcgtgagaatgtgtaggtgatcttacttttattttgaatgaatctgaaacattgattaaa |
16731559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 16468606 - 16468755
Alignment:
| Q |
23 |
gaatctgttttaatcttcttgtgaatcactctccctgtcttgaacaattaccaaacaggtgttgaagaattgattaaggtctaagaatcaaaaatttatc |
122 |
Q |
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| T |
16468606 |
gaatctgaattaatcttattgtgaatcgatatctctgtcttgaagaaccaccgaactattgttgaagaattgattaaggtccatgaatcaaaaacttctc |
16468705 |
T |
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| Q |
123 |
attggattttgtctcaaggacaagattgtgtgtgagaatgtgtagatgtt |
172 |
Q |
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| T |
16468706 |
actggattttgtattgaggacaagattgtatgtgagaatgtgtagatgtt |
16468755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 17354456 - 17354538
Alignment:
| Q |
108 |
aatcaaaaatttatcattggattttgtctcaaggacaagattgtgtgtgagaatgtgtagatgttcttacttttatttttaat |
190 |
Q |
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| T |
17354456 |
aatcaaaaacttcttaatggattttgtctcaaggacaagattgagtgcgagaatgtgtagatggtcttacttctatttttaat |
17354538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 44410914 - 44410991
Alignment:
| Q |
134 |
tctcaaggacaagattgtgtgtgagaatgtgtagatgttcttacttttatttttaat-aatccaaaacatcgattaaa |
210 |
Q |
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| T |
44410914 |
tctcaagtacaagtttgtgtatgagaatgtgtaaatgatcttaccttaatttttaatgaatctaaaacattgattaaa |
44410991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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