View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12019_high_18 (Length: 271)
Name: NF12019_high_18
Description: NF12019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12019_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 50467218 - 50466982
Alignment:
| Q |
16 |
ggacatcaaaacagtgcaagtgggaaattaaatatccatatagattcacgaggatctatagtaaaaccagacttgtgaaaacaagggcctaaaattaaat |
115 |
Q |
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| T |
50467218 |
ggacaacaaaacagtgcaagtgggaaattaaatatccatatagattcacgaggatctatagtaaaaccagacttgtgaaaacaagggcctaaaattaaat |
50467119 |
T |
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| Q |
116 |
gacagttattcaatataaaattcacgtggagttttctccttaagtagaaggcatccattggatgtaatcactaccaaagtacttattgattcatcaacat |
215 |
Q |
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| T |
50467118 |
gacagttattcaatataaaattcacgtggagttttctccttaagtagaaggcatccattggatgtaatcactaccaaagtacttattgattcatcaacat |
50467019 |
T |
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| Q |
216 |
tagtgtaatatagttatcattccttttatgtatcatg |
252 |
Q |
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| T |
50467018 |
tagtgtaatatagttatcattccttttatgtatcatg |
50466982 |
T |
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