View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12019_high_19 (Length: 257)
Name: NF12019_high_19
Description: NF12019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12019_high_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 42143658 - 42143906
Alignment:
| Q |
1 |
caaaattttacgtaaaatatgattattgaatgctcaaataaagaaattgaactgtattcctaaataatcttttgtgcaaccatagatgtcgccacacgaa |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42143658 |
caaaatttgacgtaaaatatgattattgaatactcaaataaagaaattaaactgtattcctaaataatcttttgtgcaaccatagatgtcgccacacgaa |
42143757 |
T |
|
| Q |
101 |
aataggtggaggatatctcaaaggcatatcaggaggagaaaggaagagaaccagcataggctatgaaattcttgttgagccttcactgctactacttgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42143758 |
aataggtggaggatatctcaaaggcatatcaggaggagaaaggaagagaaccagcataggctatgaaattcttgttgagccttcactgctactacttgat |
42143857 |
T |
|
| Q |
201 |
gagccaacttcaggtcttgattccacctcagcaaacaaacttcatctca |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42143858 |
gagccaacttcaggtcttgattccacctcagcaaacaaacttcttctca |
42143906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University