View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12019_high_7 (Length: 430)

Name: NF12019_high_7
Description: NF12019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12019_high_7
NF12019_high_7
[»] chr5 (13 HSPs)
chr5 (1-419)||(39675828-39676246)
chr5 (239-419)||(10873623-10873803)
chr5 (239-419)||(10878694-10878874)
chr5 (239-419)||(10883765-10883945)
chr5 (239-418)||(10866502-10866681)
chr5 (1-172)||(10866255-10866426)
chr5 (1-172)||(10873879-10874050)
chr5 (1-172)||(10878950-10879121)
chr5 (1-172)||(10884021-10884192)
chr5 (239-418)||(10887684-10887863)
chr5 (9-178)||(10887942-10888111)
chr5 (1-155)||(10045821-10045975)
chr5 (255-419)||(10046138-10046302)


Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 39675828 - 39676246
Alignment:
Q  1 ccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatgtcctcacaatctccgagattcttgctctagtttccct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675828 ccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatgtcctcacaatctccgagattcttgctctagtttccct 39675927  T
Q  101 cattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcattacgatgaagaagaagatgaagttgctgacattgctgcgaaaacc 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675928 cattgcttgccttatctaccttacggctttctttggcgttgccttcatccttcattacgatgaagaagaagatgaagttgctgacattgctgcgaaaacc 39676027  T
Q  201 accaaagtcatgccaaatctaccggaggaaatccttgtccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39676028 accaaagtcatgccaaatctaccggaggaaatccttgtccaaaaagttttgtccatggaagatgaggaggttgttggtgcagtggtgtctggatcaattc 39676127  T
Q  301 catcttactcgcttgaatcgaagcttggagattgccgacgtgctgctgtgattaggaaccaagctgtggagagagttactggaaggtcacttgaaggttt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39676128 catcttactcgcttgaatcgaagcttggagattgccgacgtgctgctgtgattaggaaccaagctgtggagagagttactggaaggtcacttgaaggttt 39676227  T
Q  401 accaatggaaggttttgat 419  Q
    |||||||||||||||||||    
T  39676228 accaatggaaggttttgat 39676246  T

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Target: chr5; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 239 - 419
Target Start/End: Complemental strand, 10873803 - 10873623
Alignment:
Q  239 ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga 338  Q
    |||||||||| |||| |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10873803 ccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccga 10873704  T
Q  339 cgtgctgctgtgattaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgat 419  Q
    ||||| ||    |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  10873703 cgtgcagcaaatattaggaaccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgat 10873623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 239 - 419
Target Start/End: Complemental strand, 10878874 - 10878694
Alignment:
Q  239 ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga 338  Q
    |||||||||| |||| |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10878874 ccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccga 10878775  T
Q  339 cgtgctgctgtgattaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgat 419  Q
    ||||| ||    |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  10878774 cgtgcagcaaatattaggaaccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgat 10878694  T

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Target: chr5; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 239 - 419
Target Start/End: Complemental strand, 10883945 - 10883765
Alignment:
Q  239 ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga 338  Q
    |||||||||| |||| |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10883945 ccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccga 10883846  T
Q  339 cgtgctgctgtgattaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgat 419  Q
    ||||| ||    |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  10883845 cgtgcagcaaatattaggaaccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgat 10883765  T

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Target: chr5; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 239 - 418
Target Start/End: Original strand, 10866502 - 10866681
Alignment:
Q  239 ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga 338  Q
    |||||||||| |||| |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10866502 ccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccga 10866601  T
Q  339 cgtgctgctgtgattaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttga 418  Q
    ||||| ||    |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  10866602 cgtgcagcaaatattaggaaccaagcggtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttga 10866681  T

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Target: chr5; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 10866255 - 10866426
Alignment:
Q  1 ccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatgtcctcacaatctccgagattcttgctctagtttccct 100  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||    
T  10866255 ccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctctgagattctcgctcttgtttccct 10866354  T
Q  101 cattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcattacgatgaagaagaaga 172  Q
    ||| |||| | || |||||||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  10866355 catcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaaga 10866426  T

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Target: chr5; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 10874050 - 10873879
Alignment:
Q  1 ccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatgtcctcacaatctccgagattcttgctctagtttccct 100  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||    
T  10874050 ccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctctgagattctcgctcttgtttccct 10873951  T
Q  101 cattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcattacgatgaagaagaaga 172  Q
    ||| |||| | || |||||||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  10873950 catcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaaga 10873879  T

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Target: chr5; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 10879121 - 10878950
Alignment:
Q  1 ccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatgtcctcacaatctccgagattcttgctctagtttccct 100  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||    
T  10879121 ccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctctgagattctcgctcttgtttccct 10879022  T
Q  101 cattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcattacgatgaagaagaaga 172  Q
    ||| |||| | || |||||||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  10879021 catcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaaga 10878950  T

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Target: chr5; HSP #9
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 10884192 - 10884021
Alignment:
Q  1 ccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatgtcctcacaatctccgagattcttgctctagtttccct 100  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||    
T  10884192 ccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctctgagattctcgctcttgtttccct 10884093  T
Q  101 cattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcattacgatgaagaagaaga 172  Q
    ||| |||| | || |||||||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  10884092 catcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacgatgaagaagaaga 10884021  T

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Target: chr5; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 239 - 418
Target Start/End: Complemental strand, 10887863 - 10887684
Alignment:
Q  239 ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga 338  Q
    |||||||||| |||| |||||||| || |||||||| ||||||||||| || ||||||||||| |||||||| ||||| |||||||| |||||||||||     
T  10887863 ccaaaaagttatgtccatggaagacgaagaggttgtcggtgcagtggtatcgggatcaattccttcttactcccttgagtcgaagctcggagattgccgt 10887764  T
Q  339 cgtgctgctgtgattaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttga 418  Q
    ||||| ||   ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||    
T  10887763 cgtgcagcaaagattaggaaccaagcagtggagagggttaccggaaggtcacttgaaggtttaccgatgaaaggttttga 10887684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 10888111 - 10887942
Alignment:
Q  9 tactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatgtcctcacaatctccgagattcttgctctagtttccctcattgctt 108  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||| |||| |||||| ||||| ||||||||||||| ||||    
T  10888111 tactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctccacatcctcacagtctctgagattgttgctgtagtttccctcatcgctt 10888012  T
Q  109 gccttatctaccttacggctttcttcggcgttgccttcatccttcattacgatgaagaagaagatgaagt 178  Q
     | |  |||||||||  ||||||||||||  |||||||||| ||||||||||||| || ||||| |||||    
T  10888011 ccttcgtctaccttattgctttcttcggcactgccttcatcattcattacgatgatgatgaagacgaagt 10887942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 10045821 - 10045975
Alignment:
Q  1 ccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatgtcctcacaatctccgagattcttgctctagtttccct 100  Q
    ||||||| || ||||||||| || |||||||||| |||||||||||||| |||||||| ||||| ||||||||||| ||||||   | | | ||||||||    
T  10045821 ccgtcgcgtattttcttcttcacaggtggcgtgagaagatccgaacctccacacctcttcatgttctcacaatctctgagattgccggtgttgtttccct 10045920  T
Q  101 cattgcttgccttatctaccttacggctttcttcggcgttgccttcatccttcat 155  Q
    ||| |||| | |||| ||||||| ||||||||||||| ||| |||||| ||||||    
T  10045921 catagcttcctttatttaccttatggctttcttcggcattggcttcattcttcat 10045975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 255 - 419
Target Start/End: Original strand, 10046138 - 10046302
Alignment:
Q  255 atggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccgacgtgctgctgtgatta 354  Q
    ||||||||||| ||||||||  |||| |||||  | ||  ||||||| || |||||||||||||| || || |||||||||  |||||| || | |||      
T  10046138 atggaagatgacgaggttgtccgtgcggtggtaaccggtacaattccgtcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcgatac 10046237  T
Q  355 ggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgat 419  Q
    | |||||||| |||||||||||||| |||| ||||||    ||||||||||||||||||||||||    
T  10046238 gtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgat 10046302  T

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