View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12019_low_1 (Length: 1290)
Name: NF12019_low_1
Description: NF12019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12019_low_1 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] scaffold0838 (1 HSPs) |
| | |
|
| [»] scaffold0832 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 670; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 420 - 1290
Target Start/End: Complemental strand, 47453162 - 47452298
Alignment:
| Q |
420 |
taaaaaatgaatgttgcgagcatttttcaacattattttgttgtttcataacttctccaacaaataactatgtta--gtaaagtcttacacacaactaca |
517 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||| |
|
|
| T |
47453162 |
taaaaaatcaatgttgcgagcatttttcaacattattttgttgtttcataacttctccaacaaatacctatgttatagtaaagtcttacacactactaca |
47453063 |
T |
|
| Q |
518 |
ggccaaaatacaaattccacatcaaccaaataatctccacgatattataataatgcaggctaaagtagaacatgtcaacaaaatgctcatgcatggttgt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47453062 |
ggccaaaatacaaattccacatcaaccaaacaatctcctcgatattataataatgcaggctaaagtagaacatgtcaacaaaatgctcatgcatggttgt |
47452963 |
T |
|
| Q |
618 |
agctgccttggaacagacgaaaagtcacttttgcaacatccttagactacgccgatcctcatacttccattcatttccacgcgtcttgagatatatccac |
717 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47452962 |
agctgccttggaacagacgaaaagtcacttttgcaacatccttagactacgccgatcctcatacttccattcatttccacgcgtctt------------- |
47452876 |
T |
|
| Q |
718 |
ctttaaaaatccatgctattataaaaataaatgcaaattcatataatattaattcatggtggcactatgagtcttgtgtctgtggcagagagtatagaca |
817 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47452875 |
----aaaaattcatgctattataaaaataaatgcaaattcatataatattaattcatggtggcactatgagtcttgtgtctgtggcagagagtatagaca |
47452780 |
T |
|
| Q |
818 |
aaaaccatggcttaacaacataaaacaannnnnnnnnnnctttccaaactattgatcaaacttaatggttaaaaaacccaattaaagggttcatgcga-c |
916 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
47452779 |
aaaaccatggcttaacaacatgaaacaattttttttttcctttccaaactattgatcaaacttaatggttaaaaaacccaattaaagggttcatgcgatc |
47452680 |
T |
|
| Q |
917 |
tttataatttcaa-agatggccaagctttggaactttgatgcaaagctagtgtaagtatgcttttacagttatttccattctgaatttctacatatactc |
1015 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47452679 |
tttataatttcaacagatggccaagctttggaactttgatgcaaagctagtgtaagtatacttttacagttatttccattctgaatttctacatatactc |
47452580 |
T |
|
| Q |
1016 |
at----atgtgcgaagctattctgaattccttcatttgcatgaatctcaggnnnnnnncaattcatgaatggcaagttgttcattatcatcctaccaact |
1111 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47452579 |
attcatatgtgcgaagctattctgaattccttcatttgcatgaatctcaggaaaaaaacaattcatgaatggcaagttgttcattatcatcctaccaact |
47452480 |
T |
|
| Q |
1112 |
aaatcaagttgaccagaacgatgacaaagaacggtggtaaaggagga---agacttattgagacggagatcttgtatctacctcttgaattgataatcca |
1208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47452479 |
aaatcaagttgaccagaacgatgacaaagaacggtggtaaaggaggaggaagacttattgagacggagatcttgtatctacctcttgaattgataatcca |
47452380 |
T |
|
| Q |
1209 |
gatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgctcct |
1290 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47452379 |
gatcttggtgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcct |
47452298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 47453589 - 47453174
Alignment:
| Q |
19 |
aatgggcggccacatcgtggggattagtctggcattctttaactcatctaaagaccgacatgacaaccaggatacccccatacctgtttccttcaatcat |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47453589 |
aatgggcggccacatcgtgggggttagtctggcattctttaactcatctaaagaccgacatgacaaccaggatacccccatacctgtttccttcaatcat |
47453490 |
T |
|
| Q |
119 |
tcccaggtcccagttagcatacactaatgtatttcagatatcgagttttgtttggtcttaatgagagctctaatagtacaaacaaaatctggttttattc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47453489 |
tcccaggtcccagttagcatacactaatgtatttcagatattgagttttgtttggtcttaatgagagctctaatagtacaaacaaaatctggttttattc |
47453390 |
T |
|
| Q |
219 |
tgtggtaggtattccaagtattaaaactacatctgcagcatcttacagaatgagtgttcatgttattttaataataaaagataaaagtttaattannnnn |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47453389 |
tgtggtaggtattccaagtattaaaactacatctgcagcatcttacagaatgagtgttcatgttattttaataataaaagataaaagtttaattattttt |
47453290 |
T |
|
| Q |
319 |
nnataagttataaaccgtttttataaattatcttgaattatgaaaataaactgaaaattaaactcacacaaagcagtgggatatacattgatttcatctt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47453289 |
ttataagttataaaccgtttttataaattatcttgaattatgaaaataaactgaaaattgaactcacacaaagcagtgggatatacattgagttcatctt |
47453190 |
T |
|
| Q |
419 |
ataaaaaatgaatgtt |
434 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
47453189 |
ataaaaaatgaatgtt |
47453174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 1181 - 1290
Target Start/End: Complemental strand, 11006462 - 11006353
Alignment:
| Q |
1181 |
tgtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttat |
1280 |
Q |
| |
|
||||||| |||| ||||||||| || || ||| |||||||||||||||||||||| ||| |||| |||||||| ||| |||||||||||| ||||||| |
|
|
| T |
11006462 |
tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat |
11006363 |
T |
|
| Q |
1281 |
ctctgctcct |
1290 |
Q |
| |
|
||||| |||| |
|
|
| T |
11006362 |
ctctgatcct |
11006353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1181 - 1285
Target Start/End: Complemental strand, 11016025 - 11015921
Alignment:
| Q |
1181 |
tgtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttat |
1280 |
Q |
| |
|
||||||| |||| |||||||||||| || ||| |||||||||| |||||||||||||| |||| ||||| ||| ||| |||||||| ||| ||||||| |
|
|
| T |
11016025 |
tgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcattgttagctcttat |
11015926 |
T |
|
| Q |
1281 |
ctctg |
1285 |
Q |
| |
|
||||| |
|
|
| T |
11015925 |
ctctg |
11015921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1189 - 1285
Target Start/End: Complemental strand, 11025029 - 11024933
Alignment:
| Q |
1189 |
cctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctg |
1285 |
Q |
| |
|
|||| ||||||||| || || ||| |||||||||| |||||||||||||| |||| ||||| ||| ||| |||||||||||| |||||||||||| |
|
|
| T |
11025029 |
cctcatgaattgatcatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctctg |
11024933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 3e-20; HSPs: 21)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 1182 - 1289
Target Start/End: Original strand, 7907904 - 7908011
Alignment:
| Q |
1182 |
gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc |
1281 |
Q |
| |
|
|||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||| ||| ||||||| || |||||||||||||||||||||| |
|
|
| T |
7907904 |
gtatcttcctcatgaattgattttccagatcctactgaggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatc |
7908003 |
T |
|
| Q |
1282 |
tctgctcc |
1289 |
Q |
| |
|
|||||||| |
|
|
| T |
7908004 |
tctgctcc |
7908011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1180 - 1290
Target Start/End: Original strand, 7770981 - 7771091
Alignment:
| Q |
1180 |
ttgtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctctta |
1279 |
Q |
| |
|
|||||||| |||| |||| | |||||||| || ||| ||||||||||||||||||||||| || | ||||| ||| ||| |||||| ||||||||||||| |
|
|
| T |
7770981 |
ttgtatctgcctcatgaactaataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctctta |
7771080 |
T |
|
| Q |
1280 |
tctctgctcct |
1290 |
Q |
| |
|
|||||| |||| |
|
|
| T |
7771081 |
tctctgatcct |
7771091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 1184 - 1285
Target Start/End: Original strand, 7813061 - 7813162
Alignment:
| Q |
1184 |
atctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc |
1283 |
Q |
| |
|
|||| |||| ||| |||||||||| ||| ||||||||||||||||||||| |||| |||| |||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
7813061 |
atctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctc |
7813160 |
T |
|
| Q |
1284 |
tg |
1285 |
Q |
| |
|
|| |
|
|
| T |
7813161 |
tg |
7813162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1181 - 1285
Target Start/End: Original strand, 7822547 - 7822651
Alignment:
| Q |
1181 |
tgtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttat |
1280 |
Q |
| |
|
||||||| |||| | | |||||||||| ||| ||||||||||||||||||||| |||| |||| |||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
7822547 |
tgtatctgcctcatcatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttat |
7822646 |
T |
|
| Q |
1281 |
ctctg |
1285 |
Q |
| |
|
||||| |
|
|
| T |
7822647 |
ctctg |
7822651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1183 - 1283
Target Start/End: Complemental strand, 48156925 - 48156825
Alignment:
| Q |
1183 |
tatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatct |
1282 |
Q |
| |
|
||||| || |||||||||||||| || ||||| || |||| ||||||||||||||| |||| ||||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
48156925 |
tatctgccacttgaattgataattcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatct |
48156826 |
T |
|
| Q |
1283 |
c |
1283 |
Q |
| |
|
| |
|
|
| T |
48156825 |
c |
48156825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 1180 - 1283
Target Start/End: Original strand, 7789666 - 7789769
Alignment:
| Q |
1180 |
ttgtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctctta |
1279 |
Q |
| |
|
|||||||| |||| |||| |||||||||| || ||| ||||||||||||||||||||||| || | ||||| ||| ||| |||||| ||||||||| ||| |
|
|
| T |
7789666 |
ttgtatctgcctcatgaactgataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctttta |
7789765 |
T |
|
| Q |
1280 |
tctc |
1283 |
Q |
| |
|
|||| |
|
|
| T |
7789766 |
tctc |
7789769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 1182 - 1285
Target Start/End: Original strand, 7877299 - 7877402
Alignment:
| Q |
1182 |
gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc |
1281 |
Q |
| |
|
|||||| |||| ||||||||| ||||| |||||| | |||||| ||||||||||||| |||| ||||| ||||||| |||| |||||||||||||||| |
|
|
| T |
7877299 |
gtatcttcctcatgaattgattatccaaatcctgatttggttgctggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatc |
7877398 |
T |
|
| Q |
1282 |
tctg |
1285 |
Q |
| |
|
|||| |
|
|
| T |
7877399 |
tctg |
7877402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1184 - 1285
Target Start/End: Original strand, 7800218 - 7800319
Alignment:
| Q |
1184 |
atctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc |
1283 |
Q |
| |
|
|||| |||| ||| |||||||||| ||| ||||||||||||||||||||| |||| |||| |||||||| ||| ||| ||||||||||||||| |||| |
|
|
| T |
7800218 |
atctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctc |
7800317 |
T |
|
| Q |
1284 |
tg |
1285 |
Q |
| |
|
|| |
|
|
| T |
7800318 |
tg |
7800319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 1180 - 1290
Target Start/End: Original strand, 7904609 - 7904719
Alignment:
| Q |
1180 |
ttgtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctctta |
1279 |
Q |
| |
|
|||||||| |||| ||||||||| || || ||| || || ||||||| |||||||||||| |||| ||||| || ||| ||||| |||||||||||||| |
|
|
| T |
7904609 |
ttgtatcttcctcgtgaattgattattcaaatcttgatgtggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctctta |
7904708 |
T |
|
| Q |
1280 |
tctctgctcct |
1290 |
Q |
| |
|
|||||| |||| |
|
|
| T |
7904709 |
tctctgatcct |
7904719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1184 - 1284
Target Start/End: Complemental strand, 45366718 - 45366618
Alignment:
| Q |
1184 |
atctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc |
1283 |
Q |
| |
|
|||| |||| ||||||||| ||||| ||||| | ||||| || |||||||||||| |||| ||||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
45366718 |
atcttcctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctc |
45366619 |
T |
|
| Q |
1284 |
t |
1284 |
Q |
| |
|
| |
|
|
| T |
45366618 |
t |
45366618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1182 - 1284
Target Start/End: Complemental strand, 49044728 - 49044626
Alignment:
| Q |
1182 |
gtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatc |
1281 |
Q |
| |
|
|||||| |||| ||| ||||| |||| || ||| |||||||||| |||| ||||||| |||| |||||||| ||| ||||| |||||||||||||||| |
|
|
| T |
49044728 |
gtatctgcctcatgacttgatcatccttattctgctgaggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatc |
49044629 |
T |
|
| Q |
1282 |
tct |
1284 |
Q |
| |
|
||| |
|
|
| T |
49044628 |
tct |
49044626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 1213 - 1290
Target Start/End: Original strand, 7765231 - 7765308
Alignment:
| Q |
1213 |
ctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgctcct |
1290 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||||||||||| ||||| |||||||||| ||||||||| |||| |
|
|
| T |
7765231 |
ctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcct |
7765308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1181 - 1284
Target Start/End: Complemental strand, 33134326 - 33134223
Alignment:
| Q |
1181 |
tgtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttat |
1280 |
Q |
| |
|
||||||| |||| ||||||||| |||| || |||||||| || ||||||||||||||| | || ||||| ||| ||| |||| | || ||||||||||| |
|
|
| T |
33134326 |
tgtatctgcctcatgaattgatcatccttattctgttgagattaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttat |
33134227 |
T |
|
| Q |
1281 |
ctct |
1284 |
Q |
| |
|
|||| |
|
|
| T |
33134226 |
ctct |
33134223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1219 - 1290
Target Start/End: Complemental strand, 45372519 - 45372448
Alignment:
| Q |
1219 |
aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgctcct |
1290 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| || ||| |||||| ||||||||| ||||||||| |||| |
|
|
| T |
45372519 |
aggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctgatcct |
45372448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1189 - 1284
Target Start/End: Original strand, 48862827 - 48862922
Alignment:
| Q |
1189 |
cctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctct |
1284 |
Q |
| |
|
|||| ||||||||| |||| |||||| | ||||| ||||||||||||||| | || ||||| ||| ||| ||||| |||||||||||||||||| |
|
|
| T |
48862827 |
cctcatgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctct |
48862922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1190 - 1284
Target Start/End: Complemental strand, 48171080 - 48170986
Alignment:
| Q |
1190 |
ctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctct |
1284 |
Q |
| |
|
|||||||||||||| | || || ||| ||||||| |||||||||||||| |||| ||||| || ||| |||||| |||||| ||||||||||| |
|
|
| T |
48171080 |
ctcttgaattgatagttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctct |
48170986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1180 - 1285
Target Start/End: Complemental strand, 7238221 - 7238116
Alignment:
| Q |
1180 |
ttgtatctacctcttgaattgataatccagatcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctctta |
1279 |
Q |
| |
|
|||||||| |||| |||| | || ||||| || ||| |||||||||| |||||||||||| | | ||||| || ||| |||||| ||||||||||||| |
|
|
| T |
7238221 |
ttgtatctgcctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctctta |
7238122 |
T |
|
| Q |
1280 |
tctctg |
1285 |
Q |
| |
|
|||||| |
|
|
| T |
7238121 |
tctctg |
7238116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1219 - 1284
Target Start/End: Complemental strand, 49049061 - 49048996
Alignment:
| Q |
1219 |
aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctct |
1284 |
Q |
| |
|
||||||| ||||| ||||||| |||| |||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
49049061 |
aggttgctggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct |
49048996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1217 - 1283
Target Start/End: Complemental strand, 48735779 - 48735713
Alignment:
| Q |
1217 |
tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc |
1283 |
Q |
| |
|
||||||| ||||||||||||||| | || ||||| || ||| |||||| ||||||||||||||||| |
|
|
| T |
48735779 |
tgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctc |
48735713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1219 - 1285
Target Start/End: Complemental strand, 50251270 - 50251204
Alignment:
| Q |
1219 |
aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctg |
1285 |
Q |
| |
|
|||||||| |||||| ||||| ||| || ||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
50251270 |
aggttgccagtgaaggctcttatacaattaaagtgggtttctaagtcttggttttctcttatctctg |
50251204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1214 - 1283
Target Start/End: Original strand, 48891020 - 48891089
Alignment:
| Q |
1214 |
tgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc |
1283 |
Q |
| |
|
|||||||||| |||| ||||||||| |||| ||||| ||| ||| |||||| |||||||||||| |||| |
|
|
| T |
48891020 |
tgttgaggttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctc |
48891089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 8e-18; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 1210 - 1285
Target Start/End: Original strand, 12194908 - 12194983
Alignment:
| Q |
1210 |
atcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctg |
1285 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || | ||||| ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
12194908 |
atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctg |
12194983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 1210 - 1285
Target Start/End: Original strand, 12439336 - 12439411
Alignment:
| Q |
1210 |
atcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctg |
1285 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || | ||||| ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
12439336 |
atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctg |
12439411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1210 - 1290
Target Start/End: Original strand, 12199914 - 12199994
Alignment:
| Q |
1210 |
atcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgctcct |
1290 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || | ||||| || ||| |||||||||||||||||||||||||| |||| |
|
|
| T |
12199914 |
atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcct |
12199994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1210 - 1290
Target Start/End: Original strand, 12444342 - 12444422
Alignment:
| Q |
1210 |
atcctgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgctcct |
1290 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || | ||||| || ||| |||||||||||||||||||||||||| |||| |
|
|
| T |
12444342 |
atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcct |
12444422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1218 - 1290
Target Start/End: Original strand, 15348477 - 15348549
Alignment:
| Q |
1218 |
gaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgctcct |
1290 |
Q |
| |
|
|||||| ||||||||||||||| |||| ||||| ||| ||| |||||| ||||||||||||||||||| |||| |
|
|
| T |
15348477 |
gaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcct |
15348549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 370 - 426
Target Start/End: Original strand, 28413948 - 28414004
Alignment:
| Q |
370 |
tgaaaattaaactcacacaaagcagtgggatatacattgatttcatcttataaaaaa |
426 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |||||||||||||||| |||||||| |
|
|
| T |
28413948 |
tgaaaattgaactcacacaaagtggtgggacatacattgatttcatcgaataaaaaa |
28414004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1225 - 1284
Target Start/End: Complemental strand, 29712925 - 29712866
Alignment:
| Q |
1225 |
ccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctct |
1284 |
Q |
| |
|
||||||||||||||| | || ||||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
29712925 |
ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct |
29712866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1228 - 1277
Target Start/End: Original strand, 29687676 - 29687725
Alignment:
| Q |
1228 |
gtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctct |
1277 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
29687676 |
gtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctct |
29687725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1219 - 1283
Target Start/End: Original strand, 24322078 - 24322142
Alignment:
| Q |
1219 |
aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc |
1283 |
Q |
| |
|
||||||| ||||||||||||| | || ||||| ||| ||| |||||| ||||||||||||||||| |
|
|
| T |
24322078 |
aggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc |
24322142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 32211865 - 32211917
Alignment:
| Q |
372 |
aaaattaaactcacacaaagcagtgggatatacattgatttcatcttataaaa |
424 |
Q |
| |
|
|||||| ||||||||||||| ||| ||| ||||||||||||||||| |||||| |
|
|
| T |
32211865 |
aaaattgaactcacacaaagtagttggacatacattgatttcatctaataaaa |
32211917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 370 - 434
Target Start/End: Complemental strand, 51732378 - 51732313
Alignment:
| Q |
370 |
tgaaaattaaactcacacaaagcagtgggatatacattgatttcatcttataaaaaa-tgaatgtt |
434 |
Q |
| |
|
||||||||||||||||| |||| ||||| | ||||||| |||||||| |||||||| |||||||| |
|
|
| T |
51732378 |
tgaaaattaaactcacataaagtagtggaaaatacattaatttcatcaaataaaaaagtgaatgtt |
51732313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 416
Target Start/End: Complemental strand, 7775101 - 7775055
Alignment:
| Q |
370 |
tgaaaattaaactcacacaaagcagtgggatatacattgatttcatc |
416 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
7775101 |
tgaaaattgaactcacacaaagtggtgggacatacattgatttcatc |
7775055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1214 - 1284
Target Start/End: Original strand, 21015387 - 21015457
Alignment:
| Q |
1214 |
tgttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctct |
1284 |
Q |
| |
|
|||||||||| ||||| | ||||||| |||| |||||||| ||| ||||| || |||||||||||||||| |
|
|
| T |
21015387 |
tgttgaggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatctct |
21015457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0838 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: scaffold0838
Description:
Target: scaffold0838; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 383 - 424
Target Start/End: Complemental strand, 2310 - 2269
Alignment:
| Q |
383 |
cacacaaagcagtgggatatacattgatttcatcttataaaa |
424 |
Q |
| |
|
||||||||| |||| || |||||||||||||||||||||||| |
|
|
| T |
2310 |
cacacaaagtagtgtgacatacattgatttcatcttataaaa |
2269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0832 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: scaffold0832
Description:
Target: scaffold0832; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 383 - 424
Target Start/End: Complemental strand, 2341 - 2300
Alignment:
| Q |
383 |
cacacaaagcagtgggatatacattgatttcatcttataaaa |
424 |
Q |
| |
|
||||||||| |||| || |||||||||||||||||||||||| |
|
|
| T |
2341 |
cacacaaagtagtgtgacatacattgatttcatcttataaaa |
2300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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