View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12019_low_10 (Length: 422)

Name: NF12019_low_10
Description: NF12019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12019_low_10
NF12019_low_10
[»] chr3 (3 HSPs)
chr3 (339-411)||(8522320-8522392)
chr3 (195-244)||(8522147-8522196)
chr3 (114-156)||(8521926-8521968)
[»] chr6 (1 HSPs)
chr6 (336-406)||(25523843-25523913)
[»] chr5 (7 HSPs)
chr5 (191-244)||(42116801-42116854)
chr5 (352-403)||(42116959-42117010)
chr5 (192-221)||(34233805-34233834)
chr5 (336-365)||(42122700-42122729)
chr5 (336-365)||(42128095-42128124)
chr5 (358-410)||(42122716-42122768)
chr5 (358-410)||(42128111-42128163)
[»] chr2 (2 HSPs)
chr2 (360-411)||(11995205-11995256)
chr2 (360-411)||(12247674-12247725)
[»] chr4 (1 HSPs)
chr4 (336-365)||(11117357-11117386)


Alignment Details
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 339 - 411
Target Start/End: Original strand, 8522320 - 8522392
Alignment:
Q  339 gacatttgcaccatctgattctgattctgattcatggttgaaccatggttcctcgtcattcttgtcctccttt 411  Q
    ||||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||||||||||| ||||    
T  8522320 gacatttgcaccatctgattctgattctgattcgtgattgaactttggttcctcgtcattcttgtccttcttt 8522392  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 8522147 - 8522196
Alignment:
Q  195 aacttggaattttattatataacacatcttgtggcatgcacttataaaca 244  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8522147 aacttggaattttattatataacacaacttgtggcatgcacttataaaca 8522196  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 8521926 - 8521968
Alignment:
Q  114 ttagctaactaatcatgtaaatatcacgcttaccatgtctatt 156  Q
    ||||||||||||||||||||||||||| |||| ||||||||||    
T  8521926 ttagctaactaatcatgtaaatatcacacttatcatgtctatt 8521968  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 25523913 - 25523843
Alignment:
Q  336 tatgacatttgcaccatctgattctgattctgattcatggttgaaccatggttcctcgtcattcttgtcct 406  Q
    ||||||||||||| |||||||||||||||||||||||||| || |||||| |||||| |||||||||||||    
T  25523913 tatgacatttgcatcatctgattctgattctgattcatggctgtaccatgattcctcctcattcttgtcct 25523843  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 42116801 - 42116854
Alignment:
Q  191 tataaacttggaattttattatataacacatcttgtggcatgcacttataaaca 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  42116801 tataaacttggaattttattatataacacatcttgtggcatgcacatgtaaaca 42116854  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 42116959 - 42117010
Alignment:
Q  352 tctgattctgattctgattcatggttgaaccatggttcctcgtcattcttgt 403  Q
    ||||||||||||||||||||||||||| ||||||||||||  ||||||||||    
T  42116959 tctgattctgattctgattcatggttgtaccatggttccttctcattcttgt 42117010  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 221
Target Start/End: Complemental strand, 34233834 - 34233805
Alignment:
Q  192 ataaacttggaattttattatataacacat 221  Q
    ||||||||||||||||||||||||||||||    
T  34233834 ataaacttggaattttattatataacacat 34233805  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 365
Target Start/End: Original strand, 42122700 - 42122729
Alignment:
Q  336 tatgacatttgcaccatctgattctgattc 365  Q
    ||||||||||||||||||||||||||||||    
T  42122700 tatgacatttgcaccatctgattctgattc 42122729  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 365
Target Start/End: Original strand, 42128095 - 42128124
Alignment:
Q  336 tatgacatttgcaccatctgattctgattc 365  Q
    ||||||||||||||||||||||||||||||    
T  42128095 tatgacatttgcaccatctgattctgattc 42128124  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 410
Target Start/End: Original strand, 42122716 - 42122768
Alignment:
Q  358 tctgattctgattcatggttgaaccatggttcctcgtcattcttgtcctcctt 410  Q
    ||||||||||||||||||||||||||||   |||| ||| |||||| ||||||    
T  42122716 tctgattctgattcatggttgaaccatgtgccctcctcactcttgttctcctt 42122768  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 410
Target Start/End: Original strand, 42128111 - 42128163
Alignment:
Q  358 tctgattctgattcatggttgaaccatggttcctcgtcattcttgtcctcctt 410  Q
    ||||||||||||||||||||||||||||   |||| ||| |||||| ||||||    
T  42128111 tctgattctgattcatggttgaaccatgtgccctcctcactcttgttctcctt 42128163  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 11995256 - 11995205
Alignment:
Q  360 tgattctgattcatggttgaaccatggttcctcgtcattcttgtcctccttt 411  Q
    ||||||||||||||||||| ||||||||||||  ||| |||||| |||||||    
T  11995256 tgattctgattcatggttgcaccatggttcctactcactcttgttctccttt 11995205  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 411
Target Start/End: Original strand, 12247674 - 12247725
Alignment:
Q  360 tgattctgattcatggttgaaccatggttcctcgtcattcttgtcctccttt 411  Q
    ||||||||||||||||||| ||||||||||||  ||| |||||| |||||||    
T  12247674 tgattctgattcatggttgcaccatggttcctactcactcttgttctccttt 12247725  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 365
Target Start/End: Original strand, 11117357 - 11117386
Alignment:
Q  336 tatgacatttgcaccatctgattctgattc 365  Q
    ||||||||||||||||||||||||||||||    
T  11117357 tatgacatttgcaccatctgattctgattc 11117386  T

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