View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12019_low_12 (Length: 391)
Name: NF12019_low_12
Description: NF12019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12019_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 202 - 387
Target Start/End: Original strand, 12424310 - 12424495
Alignment:
| Q |
202 |
gggtgatacactttccacgagttcttttgatatttttaatttctccaaatttgagtgattcactttccacaagttcctttcattctccaaatttttcagt |
301 |
Q |
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| T |
12424310 |
gggtgatacactttccacgagttcttttgatatttttaatttctccaaatttgggtgattcactttccacaagttcctttcattctccaaatttttcagt |
12424409 |
T |
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| Q |
302 |
ttcaaccgtttcgccatgtctcttctctcttccacactacgtgttcctctcatcttctcccaaaaccctaaaccttcttctctctc |
387 |
Q |
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| T |
12424410 |
ttcaaccgtttcgccatgtctcttctctcttccacactacgtgttcctctcatcttctcccaaaaccctaaaccttcttctctctc |
12424495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 12424107 - 12424253
Alignment:
| Q |
1 |
aatatggacattaattcatcgtattttttcaagatcggttgtatttctcccttgccagccaaattccaaaaggtatcacgttgtggattatagtgcaggg |
100 |
Q |
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| T |
12424107 |
aatatggacattaattcatcgtattttttcaagatcggttgtatttctcccttgccagcgaaattccaaaaggtatcacgttgtggattatagtgcaggg |
12424206 |
T |
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| Q |
101 |
ccaac--nnnnnnnncaagatttttaagcaaaaactataattactcc |
145 |
Q |
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| T |
12424207 |
ccaacaaaaaaaaaacaagatttttaagcaaaaactataattactcc |
12424253 |
T |
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