View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12019_low_14 (Length: 385)
Name: NF12019_low_14
Description: NF12019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12019_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 2756753 - 2757121
Alignment:
| Q |
1 |
ataaaaagaaagagagagaacattaatatcacacttgtagccttaaaaacactagcaatactatgtaacaacaatatcttatagaacacactctgaactc |
100 |
Q |
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| T |
2756753 |
ataaaaagaaagagagagaacattaatatcacacttgtagccttaaaaacactagcaatactatgtaacaacaatatcttatagaacacactctgaactc |
2756852 |
T |
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| Q |
101 |
ttccacacacnnnnnnnntcatgatttcttctatggtttttcctcaaactagttgtggaacttcacaaagttcatgcttgattaggtggttgtctatatt |
200 |
Q |
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| T |
2756853 |
ttccacacacaaaaataatcacgatttcttctatggttttccctcaaactagttgtggaacttcacaaagttcatgcttgattaggtggttgtctatatt |
2756952 |
T |
|
| Q |
201 |
tccttgccctcctgaattcatatatcacaacaaaaagatatttagaatatgagaaatatatagaataggatgagattaactatatgaatagaaataagat |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2756953 |
tccttgctctcctgaattcatatatcacaacaaaaagatatttagaatatgagaaatatatagaataggatgagatgaactatatgaatagaaataagat |
2757052 |
T |
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| Q |
301 |
gacatgaaaacaaagttttaaaaatcagttcgaattggccgggttaacttgaatcgggaagtatatagt |
369 |
Q |
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| T |
2757053 |
gacatgaaaacaaagttttaaaaatcagttcgaattggccgggttaacttgaatcaggaattatatagt |
2757121 |
T |
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