View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12019_low_18 (Length: 285)
Name: NF12019_low_18
Description: NF12019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12019_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 41080827 - 41080566
Alignment:
| Q |
16 |
ttctgttccttctttaacttcaagaatcattaaccattacagaatgagagaggatataaaagcttataacctatctggtatgggttgtagtgctagtcta |
115 |
Q |
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| T |
41080827 |
ttctgttccttctttaacttcaagaatcattaaccattacaaaatgagagaggatataaaagcttataacctatctggtatgggttgtagtgctagtcta |
41080728 |
T |
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| Q |
116 |
atctcattagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtctcttagtacaaattggtattcaggaa |
215 |
Q |
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| T |
41080727 |
atctcattagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtctcttagtacaaattggtattcaggaa |
41080628 |
T |
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| Q |
216 |
tcaataggtcaatgattcttgcaaattgtcttttccgtaccggcggttgtgcaattcttctc |
277 |
Q |
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| T |
41080627 |
tcaataggtcaatgattcttgcaaattgtcttttccgtaccggcggttgtgcaattcttctc |
41080566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 90 - 274
Target Start/End: Complemental strand, 23078267 - 23078083
Alignment:
| Q |
90 |
ctggtatgggttgtagtgctagtctaatctcattagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtc |
189 |
Q |
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| T |
23078267 |
ctggaatgggttgtagtgctagtcttatatcagtagatattgttaaaaacattttcaaatcacaaagaaacaagttagcacttttggtcacatcagagtc |
23078168 |
T |
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| Q |
190 |
tcttagtacaaattggtattcaggaatcaataggtcaatgattcttgcaaattgtcttttccgtaccggcggttgtgcaattctt |
274 |
Q |
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| T |
23078167 |
tcttagtccaaattggtatcctggtagtaatagatcaatgatcttagccaattgtctttttcgcaccggcggttgtgccattctt |
23078083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 264
Target Start/End: Complemental strand, 23073728 - 23073485
Alignment:
| Q |
21 |
ttccttctttaacttcaagaatcattaaccattacagaatgagagaggatataaaagcttataacctatctggtatgggttgtagtgctagtctaatctc |
120 |
Q |
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||||||||||| |||| |||||||||||| ||||| ||||||| | || |||||| || || || | || |||||||||||||| ||||| || || |
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| T |
23073728 |
ttccttctttatcttcgcgaatcattaaccgttacaaaatgagacacgacgtaaaagtgtacaatctcaccggaatgggttgtagtgcaagtcttatatc |
23073629 |
T |
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| Q |
121 |
attagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtctcttagtacaaattggtattcaggaatcaat |
220 |
Q |
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| T |
23073628 |
attagatattgttaaaaacattttcaaatcacagagaaataagttagcacttttggtcacatcagagtctcttagtccaaattggtatactggcaatgat |
23073529 |
T |
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| Q |
221 |
aggtcaatgattcttgcaaattgtcttttccgtaccggcggttg |
264 |
Q |
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| T |
23073528 |
agatcaatgatcctagccaactgtcttttccgttccggcggttg |
23073485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 23110707 - 23110820
Alignment:
| Q |
95 |
atgggttgtagtgctagtctaatctcattagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtctctta |
194 |
Q |
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|||||||| ||||||||||| || ||| |||| || || ||||||||||||| ||| ||| || |||| || |||||| | ||||||||||||||| |
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| T |
23110707 |
atgggttgcagtgctagtcttatttcactagatattgttaaaaacattttcaaatcacaaagaaataagttagcacttttggtcacatcagagtctcttt |
23110806 |
T |
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| Q |
195 |
gtacaaattggtat |
208 |
Q |
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|| ||||||||||| |
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| T |
23110807 |
gtccaaattggtat |
23110820 |
T |
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