View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12019_low_2 (Length: 894)
Name: NF12019_low_2
Description: NF12019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12019_low_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 804; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 804; E-Value: 0
Query Start/End: Original strand, 10 - 875
Target Start/End: Complemental strand, 48366246 - 48365378
Alignment:
| Q |
10 |
tgagatgaacaccttgtggaagaaggctgtatctgatattgagctcttcaaatattcttttaacttccatcactagttcacttttcctattcaccttctc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48366246 |
tgagatgaacaccttgtggaagaaggctgtatctgatattgagctcttcaaatattcttttaacttccatcactagttcacttttcctattcaccttctc |
48366147 |
T |
|
| Q |
110 |
tccaaactcttgaaagttcattgtgtgagtaacataaagacccatcttaatcttatttacattttcaatctctattactaccaagctgaaattaggatgc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48366146 |
tccaaactcttgaaagttcattgtgtgagtaacataaagacccatcttaatcttatttacattttcaatctctattactaccaagctgaaattaggatgc |
48366047 |
T |
|
| Q |
210 |
cagtattgtggattcctctccgcgtacctannnnnnnnnnnnn---aaacaaaacattacaacaaagaaatacatagaaatcttaagatcaaagcaacaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
48366046 |
cagtattgtggattcctctccgcgtacctattttttatttatttttaaacaaaacattacaacaaagaaatacatagaaatcttaagattaaagcaacaa |
48365947 |
T |
|
| Q |
307 |
gagttgttccaaatttgtgataaaacttttcagtagcttacctcgttattttttccttcaatgctccaattttttctgctggtgtcgtaaaatcaaccga |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48365946 |
gagttgttccaaatttgtgataaaacttttcagtagcttacctcgttattttttctttcaatgctccaattttctctgctggtgtcgtaaaatcaaccga |
48365847 |
T |
|
| Q |
407 |
gaactctataccttcagccatatttgggcttctgtaataattgctaatcggtttagtggcgaggacagagtttggataatacaccttttcattattaagc |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48365846 |
gaactctataccttcagccatatttgggcttctgtaataattgctaatcggtttagtggcgaggacagagtttggataatacaccttttcattattaagc |
48365747 |
T |
|
| Q |
507 |
ttcaagaatactgttgtcaatatattcatttcttcaaccaatagctgccagataattcgatgcattaatacgtgaatctcaaaacagtaaaaataaattc |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48365746 |
ttcaagaatactgttgtcaatatattcatttcttcaaccaatagctgccagataattcgatgcattaatacgtgaatctcaaaacagtaaaaataaattc |
48365647 |
T |
|
| Q |
607 |
ggctgctataagttacctcaacaccatctacaacacaacgatcgccaacatcgaatggatgcattacaaagacgaagatgatggcttcaaatatattctt |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48365646 |
ggctgctataagttacctcaacaccatctacaacacaacgatcgccaacatcgaatggatgcattacaaagacgaagatgatggcttcaaatatattctt |
48365547 |
T |
|
| Q |
707 |
gcacgtgtttccaaacatgaaccccgctagtactagctgtgatgagaggaatacaagtacttttgttgttgcaatctccattagaagaagccacactact |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48365546 |
gcacgtgtttccaaacatgaaccccgctagtactagctgtgatgagaggaatacaagtacttttgttgttgcaatctccattagaagaagccacactact |
48365447 |
T |
|
| Q |
807 |
atgctcaccactaccaacacccctgtcacaagcttgtttaattgtttaacagctgtttttgtgtcgcat |
875 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48365446 |
atgctcaccactaccaacacccctgtcacaagcttgtttaattgtttaacagctgtttttgtgtcgcat |
48365378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 10 - 873
Target Start/End: Complemental strand, 48385776 - 48384921
Alignment:
| Q |
10 |
tgagatgaacaccttgtggaagaaggctgtatctgatattgagctcttcaaatattcttttaacttccatcactagttcacttttcctattcaccttctc |
109 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| | || |||||||| |||||||||||| ||| || |||||| |
|
|
| T |
48385776 |
tgagatgaacaccttgtggaagaaggttgtatcttatattgagatcttcaaatattttctttacttccattactagttcacttctccgcttggtcttctc |
48385677 |
T |
|
| Q |
110 |
tccaaactcttgaaagttcattgtgtgagtaacataaagacccatcttaatcttatttacattttcaatctctattactaccaagctgaaattaggatgc |
209 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||| | |||||||| | |||||||||||| |
|
|
| T |
48385676 |
tccaaactcttgaaaattcattgtgtgagtaacaaaaagacccatcttaatattatttacattttcaatctccttcactaccaatccaaaattaggatgc |
48385577 |
T |
|
| Q |
210 |
cagtattgtggattcctctccgcgtacctannnnnnnnnnnnnaaacaaaacattacaacaaagaaatacatagaaatcttaagatcaaagcaacaagag |
309 |
Q |
| |
|
||||||||||||||| ||||| |||||| || || |||||| ||||||||||| ||| ||||| |||||| | |||| |||| |
|
|
| T |
48385576 |
cagtattgtggattcttctccaaatacctagttttg--------aaaaagacattagaacaaagaaattcattgaaatactaagattacggcaataagac |
48385485 |
T |
|
| Q |
310 |
ttgttccaaatttgtgataaaacttttcagtagcttacctcgttattttttccttcaatgctccaattttttctgctggtgtcgtaaaatcaaccgagaa |
409 |
Q |
| |
|
|||||||||||| ||||||||| || ||||||||||| | | |||||| |||| ||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48385484 |
ttgttccaaattgaggataaaactc--cactagcttacctcttcactttttctttcagtgccccaattttctctgctggtgtcgtaaaatcaaccgagaa |
48385387 |
T |
|
| Q |
410 |
ctctataccttcagccatatttgggcttctgtaataattgctaatcggtttagtggcgaggacagagtttggataatacaccttttcattattaagcttc |
509 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48385386 |
ctctaccttttcaaccatatttgggcttctgtaataattgctaatcggtttagaggcgaggacagagtttggataatacaacttttcattattaagcttc |
48385287 |
T |
|
| Q |
510 |
aagaatactgttgtcaatatattcatttcttcaaccaatagctgccagataattcgatg-cattaatacgtgaatctcaaaacagtaaaaataaattcgg |
608 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||||||||||||| || || |||| ||||||||| |
|
|
| T |
48385286 |
aagaatactgttgtcaatatattcatctcttcaaccaatagctgccagataattaaaaggcattaatacgtgaatctctaa-caacaaaattaaattcgg |
48385188 |
T |
|
| Q |
609 |
ctgctata--agttacctcaacaccatctacaacacaacgatcgccaacatcgaatggatgcattacaaagacgaagatgatggcttcaaatatattctt |
706 |
Q |
| |
|
| |||| | |||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
48385187 |
cagctacagaagttacctcaacaccatctataacacaccgatcgccaacatcgaacggatgcattacaaacacgaagatgatggcttcaaaaatattctt |
48385088 |
T |
|
| Q |
707 |
gcacgtgtttccaaacatgaaccccgctagtactagctgtgatgagaggaatacaagtacttttgttgttgcaatctccattagaagaagccacactact |
806 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
48385087 |
gcacgtgtttccaaacatgaaagccgcgagtactagctgcgatgagaggaatacaagtacttttgttgtcgcaatctccattagaagaagccacactatt |
48384988 |
T |
|
| Q |
807 |
atgctcaccactaccaacacccctgtcacaagcttgtttaattgtttaacagctgtttttgtgtcgc |
873 |
Q |
| |
|
||| |||||||||| | |||||||| |||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
48384987 |
atggtcaccactactaggacccctgtaacaagcttgtttaattgttttacagctgttttagtgtcgc |
48384921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 340 - 871
Target Start/End: Original strand, 48396656 - 48397189
Alignment:
| Q |
340 |
tagcttacctcgttattttttccttcaatgctccaattttttctgctggtgtcgtaaaatcaaccgagaactctataccttcagccatatttgggcttct |
439 |
Q |
| |
|
||||||||||| |||||||||| |||| || ||| ||||| ||||||| || ||||||||||| |||||||||| || ||| ||||||| |||||||| |
|
|
| T |
48396656 |
tagcttacctctttattttttcattcagtgatccgattttctctgctgacgttgtaaaatcaactgagaactctacactgtcacccatattagggcttct |
48396755 |
T |
|
| Q |
440 |
gtaataattgctaatcggtttagtggcgaggacagagtttggataatacaccttttcattattaagcttcaagaatactgttgtcaatatattcatttct |
539 |
Q |
| |
|
|||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| |
|
|
| T |
48396756 |
gtaataattgctgatcggttttatggctaggacagagtttggataatacaccttttcattattaagtttcaagaatactgttgtcagtatgttcatttct |
48396855 |
T |
|
| Q |
540 |
tcaaccaatagctgccagataattcg--atgcattaatacgtgaatctcaaaacagtaaaaataaattcggctgctataagttacctcaacaccatctac |
637 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||| ||| |||||||| |||| |||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
48396856 |
tcaaccaatagctgcaagataattttgaatgcattaatacgcaaatatcaaaacaataaagttaaactcggctgctataaattacctcaacaccatctat |
48396955 |
T |
|
| Q |
638 |
aacacaacgatcgccaacatcgaatggatgcattacaaagacgaagatgatggcttcaaatatattcttgcacgtgtttccaaacatgaaccccgctagt |
737 |
Q |
| |
|
|| ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
48396956 |
aaaacatcgatcgccaacatcaaatggatgcattacaaacacgaagatgatggcttcaaatatattcttgcacgtgtttccaaacatgaaagccgcaagt |
48397055 |
T |
|
| Q |
738 |
actagctgtgatgagaggaatacaagtacttttgttgttgcaatctccattagaagaagccacactactatgctcaccactaccaacacccctgtcacaa |
837 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| |||| |
|
|
| T |
48397056 |
actagctgtgatgagaggaatacaagtacttttgttgttgcaatctccattagaagaagccacactactatggtcaccactactaggacccctgtaacaa |
48397155 |
T |
|
| Q |
838 |
gcttgtttaattgtttaacagctgtttttgtgtc |
871 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |
|
|
| T |
48397156 |
gcttgtttaattgtttaaccgctgttttagtgtc |
48397189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 48396305 - 48396525
Alignment:
| Q |
10 |
tgagatgaacaccttgtggaagaaggctgtatctgatattgagctcttcaaatattcttttaacttccatcactagttcacttttcctattcaccttctc |
109 |
Q |
| |
|
|||||||||||||||| |||| |||| |||||||||||||||||||||||||||| | || ||||||||||||| ||||||| ||| || |||||| |
|
|
| T |
48396305 |
tgagatgaacaccttgcggaataaggtagtatctgatattgagctcttcaaatattttctttacttccatcactaattcacttctccgcttagtcttctc |
48396404 |
T |
|
| Q |
110 |
tccaaactcttgaaagttcattgtgtgagtaacataaagacccatcttaatcttatttacattttcaatctctattactaccaagctgaaattaggatgc |
209 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |||||| |||||||| |
|
|
| T |
48396405 |
cccaaattcttgaaagttcattgtgtgagtaacataaagacccatcttaatcttatttacattttcaatctccttcactgccaaactgaaactaggatgc |
48396504 |
T |
|
| Q |
210 |
cagtattgtggattcctctcc |
230 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
48396505 |
cagtattgtggattcctctcc |
48396525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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